Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CCX78_RS09855 Genome accession   NZ_AP017931
Coordinates   1935684..1936811 (-) Length   375 a.a.
NCBI ID   WP_011373722.1    Uniprot ID   Q38ZS1
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1930684..1941811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS09845 (LASAK_01967) gyrA 1931050..1933623 (-) 2574 WP_096585786.1 DNA gyrase subunit A -
  CCX78_RS09850 (LASAK_01968) gyrB 1933671..1935647 (-) 1977 WP_011373723.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CCX78_RS09855 (LASAK_01969) recF 1935684..1936811 (-) 1128 WP_011373722.1 DNA replication/repair protein RecF Machinery gene
  CCX78_RS09860 (LASAK_01970) yaaA 1936818..1937045 (-) 228 WP_016264312.1 S4 domain-containing protein YaaA -
  CCX78_RS09865 (LASAK_01971) dnaN 1937288..1938427 (-) 1140 WP_011373720.1 DNA polymerase III subunit beta -
  CCX78_RS09870 (LASAK_01972) dnaA 1938605..1939951 (-) 1347 WP_011373719.1 chromosomal replication initiator protein DnaA -
  CCX78_RS09875 (LASAK_01973) rpmH 1940523..1940663 (+) 141 WP_004265830.1 50S ribosomal protein L34 -
  CCX78_RS09880 (LASAK_01974) rnpA 1940729..1941091 (+) 363 WP_011375565.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43246.17 Da        Isoelectric Point: 6.5993

>NTDB_id=57798 CCX78_RS09855 WP_011373722.1 1935684..1936811(-) (recF) [Latilactobacillus sakei strain LK-145]
MYLSELQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDRELIQWHEDFAKITGLVQRSAGK
TPLELVLSQKGKKAKVNHLEQAKLSQYIGQLNVVLFAPEDLNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQR
NQYLKQLQRRQAKDLVYLGVLSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLDQSVEE
LYQQFQTLYEKQQIREVEQGTTLIGPHRDDVQFLVNDKDVQAFGSQGQQRTTALSVKLAEIDLMKAQTGEYPILLLDDVL
SELDDLRQTHLLKTFQNKVQTFLTTTSLENVKKEIIATPRVFTVTNGVVIEEQAE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=57798 CCX78_RS09855 WP_011373722.1 1935684..1936811(-) (recF) [Latilactobacillus sakei strain LK-145]
ATGTATCTAAGCGAACTACAACTGAATCATTATCGTAATTATGAGTCAGTTGATGTGCACTTTTCACCGGATACGAACGT
CTTGATTGGTGAAAATGCGCAGGGGAAAACGAACTTACTAGAAGCAATCTACGTTTTAGCCTTGGCCCGCTCACATCGCA
CGAATACCGATCGCGAATTAATTCAATGGCATGAAGATTTCGCTAAAATTACCGGCTTGGTCCAACGTTCTGCAGGGAAA
ACCCCGTTAGAACTCGTTTTAAGCCAAAAAGGTAAAAAGGCGAAGGTCAATCATTTAGAACAGGCCAAGTTATCACAATA
TATTGGTCAGCTAAACGTCGTGTTATTTGCGCCGGAGGATTTAAACATCGTTAAGGGTTCGCCCGCTGTGAGACGTCATT
TCATTGATATGGAATTCGGGCAGATGAGTAGCAAGTATCTCTATAATATTTCGCAATACAAATCAATTCTGAAACAACGT
AATCAATATCTTAAGCAACTCCAACGGCGCCAAGCCAAGGATCTTGTTTATTTAGGTGTTTTATCGGATCAATTAGCGGC
TTACGGGGCGGAAGTGACCGTGGCCCGGCGCCAGTTTCTCCAACAAATGGAAAAATGGGCCCAAAAATTGCATCAGGAGA
TTACGAAGGATCGGGAAGTCTTGACGTTTAAATATCAAAGTCAGATTCCAGAAGAACAATTGGATCAAAGTGTCGAAGAA
CTCTATCAACAATTTCAAACCTTGTATGAGAAACAACAAATCCGTGAGGTTGAACAAGGCACGACGTTGATTGGTCCCCA
CCGCGATGATGTTCAATTTTTAGTCAACGATAAGGATGTGCAGGCCTTTGGTTCCCAAGGGCAACAACGGACAACCGCGT
TGAGTGTCAAATTGGCCGAAATTGACTTGATGAAGGCCCAAACCGGGGAATACCCGATTTTATTACTGGACGATGTGTTG
TCGGAATTAGACGATTTACGCCAAACACATTTGTTGAAGACGTTCCAAAACAAAGTCCAAACATTCCTCACGACAACCAG
TTTAGAGAATGTTAAAAAAGAAATTATTGCGACACCGCGCGTGTTTACAGTCACCAACGGGGTCGTCATAGAAGAACAAG
CAGAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-366)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

56.183

99.2

0.557
  recF Streptococcus pneumoniae R6

48.509

98.4

0.477

Multiple sequence alignment