Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KRO90_RS04920 Genome accession   NZ_CP076736
Coordinates   1028670..1029410 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain X4-201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1023670..1034410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRO90_RS04905 (KRO90_04875) ponA 1024256..1026811 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  KRO90_RS04910 (KRO90_04880) pilM 1026974..1028032 (+) 1059 WP_032043164.1 pilus assembly protein PilM Machinery gene
  KRO90_RS04915 (KRO90_04885) pilN 1028032..1028673 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  KRO90_RS04920 (KRO90_04890) pilO 1028670..1029410 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KRO90_RS04925 (KRO90_04895) pilP 1029421..1029948 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  KRO90_RS04930 (KRO90_04900) pilQ 1030015..1032180 (+) 2166 WP_001017028.1 type IV pilus secretin PilQ Machinery gene
  KRO90_RS04935 (KRO90_04905) aroK 1032192..1032761 (+) 570 WP_000643712.1 shikimate kinase AroK -
  KRO90_RS04940 (KRO90_04910) aroB 1032790..1033872 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=577857 KRO90_RS04920 WP_000076101.1 1028670..1029410(+) (pilO) [Acinetobacter baumannii strain X4-201]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=577857 KRO90_RS04920 WP_000076101.1 1028670..1029410(+) (pilO) [Acinetobacter baumannii strain X4-201]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAATCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683