Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CCX78_RS08140 Genome accession   NZ_AP017931
Coordinates   1566972..1567568 (-) Length   198 a.a.
NCBI ID   WP_011374047.1    Uniprot ID   Q38YT8
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1561972..1572568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS08100 (LASAK_01598) - 1562169..1562366 (-) 198 WP_011374055.1 hypothetical protein -
  CCX78_RS08105 (LASAK_01599) - 1562434..1563180 (-) 747 WP_025016440.1 acyl-[acyl-carrier-protein] thioesterase -
  CCX78_RS08110 (LASAK_01600) rsmI 1563191..1564069 (-) 879 WP_011374053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CCX78_RS08115 (LASAK_01601) - 1564168..1564521 (-) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  CCX78_RS08120 (LASAK_01602) holB 1564573..1565565 (-) 993 WP_025016439.1 DNA polymerase III subunit delta' -
  CCX78_RS08125 (LASAK_01603) - 1565569..1565898 (-) 330 WP_011374050.1 cyclic-di-AMP receptor -
  CCX78_RS08130 (LASAK_01604) tmk 1565913..1566557 (-) 645 WP_025016438.1 dTMP kinase -
  CCX78_RS08135 (LASAK_01605) - 1566701..1566955 (-) 255 WP_011374048.1 YaaL family protein -
  CCX78_RS08140 (LASAK_01606) recR 1566972..1567568 (-) 597 WP_011374047.1 recombination mediator RecR Machinery gene
  CCX78_RS08145 (LASAK_01607) - 1567594..1567902 (-) 309 WP_056947773.1 YbaB/EbfC family nucleoid-associated protein -
  CCX78_RS08150 (LASAK_01608) dnaX 1567929..1569647 (-) 1719 WP_056947771.1 DNA polymerase III subunit gamma/tau -
  CCX78_RS08160 (LASAK_01609) tadA 1570072..1570590 (-) 519 WP_011374044.1 tRNA adenosine(34) deaminase TadA -
  CCX78_RS08165 (LASAK_01610) - 1570671..1571015 (-) 345 WP_056947769.1 hypothetical protein -
  CCX78_RS08170 (LASAK_01611) - 1571088..1571693 (-) 606 WP_011374042.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22051.38 Da        Isoelectric Point: 5.1115

>NTDB_id=57783 CCX78_RS08140 WP_011374047.1 1566972..1567568(-) (recR) [Latilactobacillus sakei strain LK-145]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTARSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=57783 CCX78_RS08140 WP_011374047.1 1566972..1567568(-) (recR) [Latilactobacillus sakei strain LK-145]
ATGCAATATCCAGAACCAATTGCGAAGTTGATCGAAAGTTATATGAAGTTACCAGGCATTGGTAACAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TCCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACCGCGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGTAAAGGGCCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCAGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGCTTAGCCCATGGTTTAGCGGTCGGGAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCTGTCGAGGGTCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48

Multiple sequence alignment