Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KQY33_RS02095 Genome accession   NZ_CP076733
Coordinates   436256..436852 (-) Length   198 a.a.
NCBI ID   WP_086367516.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd2008     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 431256..441852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY33_RS02080 (KQY33_02080) - 432348..433361 (+) 1014 WP_005297636.1 Fe(3+) ABC transporter substrate-binding protein -
  KQY33_RS02085 (KQY33_02085) - 433517..435142 (+) 1626 WP_005297638.1 iron ABC transporter permease -
  KQY33_RS02090 (KQY33_02090) - 435145..436182 (+) 1038 WP_036764789.1 ABC transporter ATP-binding protein -
  KQY33_RS02095 (KQY33_02095) opaR 436256..436852 (-) 597 WP_086367516.1 TetR/AcrR family transcriptional regulator Regulator
  KQY33_RS02100 (KQY33_02100) hpt 437073..437609 (+) 537 WP_005297644.1 hypoxanthine phosphoribosyltransferase -
  KQY33_RS02105 (KQY33_02105) can 437684..438355 (-) 672 WP_005297646.1 carbonate dehydratase -
  KQY33_RS02110 (KQY33_02110) - 438454..439377 (+) 924 WP_005297648.1 ABC transporter ATP-binding protein -
  KQY33_RS02115 (KQY33_02115) - 439374..440144 (+) 771 WP_065171758.1 ABC transporter permease -
  KQY33_RS02120 (KQY33_02120) panC 440262..441152 (-) 891 WP_005297652.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22796.08 Da        Isoelectric Point: 7.1177

>NTDB_id=577807 KQY33_RS02095 WP_086367516.1 436256..436852(-) (opaR) [Photobacterium damselae strain Pdd2008]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEMANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKNNLQKLTAVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADSYLQSL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=577807 KQY33_RS02095 WP_086367516.1 436256..436852(-) (opaR) [Photobacterium damselae strain Pdd2008]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGCGCACTGGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGGGGCCACGCAGATATCGCGGAAATGGCAAATGTCTCTGTTGCAACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACAGCAAAAGCCAAACTGACTAACCTTACCGATTGCTTAATTAAAGCTGTTATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACCTCAGTACGTGATGATATTTGGCCGCTGTTTATTAAAACCA
ATAAAAATAACTTACAAAAGTTAACCGCGGTTTTTGAACAGGGATTAACGGCTGGAGAATTTAGCCGCTCTCAATCTGCA
TCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACGCACCTAACCTTAGACCCTGAAATTAT
GCAGCGACAAGCTGATAGCTATTTACAGAGCTTGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

48.485

100

0.485
  hapR Vibrio cholerae C6706

48.241

100

0.485
  hapR Vibrio cholerae strain A1552

48.241

100

0.485