Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KP952_RS18625 Genome accession   NZ_CP076731
Coordinates   3503595..3504317 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3498595..3509317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS18590 (KP952_18590) fliW 3498735..3499166 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  KP952_RS18595 (KP952_18595) yviE 3499187..3499762 (-) 576 WP_014481045.1 DUF6470 family protein -
  KP952_RS18600 (KP952_18600) flgL 3499809..3500705 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  KP952_RS18605 (KP952_18605) flgK 3500716..3502239 (-) 1524 WP_213783463.1 flagellar hook-associated protein FlgK -
  KP952_RS18610 (KP952_18610) flgN 3502258..3502740 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KP952_RS18615 (KP952_18615) flgM 3502756..3503022 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  KP952_RS18620 (KP952_18620) yvyF 3503103..3503522 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  KP952_RS18625 (KP952_18625) comFC 3503595..3504317 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  KP952_RS18630 (KP952_18630) comFB 3504281..3504577 (-) 297 WP_003227989.1 late competence protein ComFB -
  KP952_RS18635 (KP952_18635) comFA 3504637..3506028 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  KP952_RS18640 (KP952_18640) fakBA 3506135..3506980 (-) 846 WP_014481053.1 DegV family protein -
  KP952_RS18645 (KP952_18645) degU 3507078..3507767 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  KP952_RS18650 (KP952_18650) degS 3507850..3509007 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=577787 KP952_RS18625 WP_014481051.1 3503595..3504317(-) (comFC) [Bacillus subtilis subsp. subtilis strain Miz-8]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=577787 KP952_RS18625 WP_014481051.1 3503595..3504317(-) (comFC) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992