Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KP952_RS02130 Genome accession   NZ_CP076731
Coordinates   425446..426594 (+) Length   382 a.a.
NCBI ID   WP_069837255.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 420446..431594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS02110 (KP952_02110) yclH 420822..421502 (-) 681 WP_014478826.1 ABC transporter ATP-binding protein -
  KP952_RS02115 (KP952_02115) yclI 421518..422978 (-) 1461 WP_015382763.1 ABC transporter permease -
  KP952_RS02120 (KP952_02120) yclJ 423191..423874 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  KP952_RS02125 (KP952_02125) yclK 423861..425282 (+) 1422 WP_072557076.1 two-component system sensor histidine kinase YclK -
  KP952_RS02130 (KP952_02130) rapC 425446..426594 (+) 1149 WP_069837255.1 response regulator aspartate phosphatase RapC Regulator
  KP952_RS02135 (KP952_02135) phrC 426578..426700 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  KP952_RS02140 (KP952_02140) yczM 426799..426888 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  KP952_RS02145 (KP952_02145) yczN 426970..427083 (-) 114 WP_014478831.1 YjcZ family sporulation protein -
  KP952_RS02150 (KP952_02150) thrD 427236..428600 (-) 1365 WP_021481755.1 aspartate kinase -
  KP952_RS02155 (KP952_02155) ceuB 428991..429941 (+) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  KP952_RS02160 (KP952_02160) yclO 429934..430881 (+) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45621.64 Da        Isoelectric Point: 4.9618

>NTDB_id=577730 KP952_RS02130 WP_069837255.1 425446..426594(+) (rapC) [Bacillus subtilis subsp. subtilis strain Miz-8]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=577730 KP952_RS02130 WP_069837255.1 425446..426594(+) (rapC) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAATTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.476

100

0.995
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568