Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   KQ224_RS04000 Genome accession   NZ_CP076721
Coordinates   789228..789917 (-) Length   229 a.a.
NCBI ID   WP_216807100.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 784228..794917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS03975 (KQ224_03975) - 784709..785422 (-) 714 Protein_799 nitroreductase family protein -
  KQ224_RS03980 (KQ224_03980) dnaI 785419..786318 (-) 900 WP_172036298.1 primosomal protein DnaI -
  KQ224_RS03985 (KQ224_03985) - 786318..787469 (-) 1152 WP_216807098.1 replication initiation/membrane attachment protein -
  KQ224_RS03990 (KQ224_03990) nrdR 787456..787947 (-) 492 WP_171988930.1 transcriptional regulator NrdR -
  KQ224_RS03995 (KQ224_03995) - 788021..789148 (-) 1128 WP_216807099.1 AI-2E family transporter -
  KQ224_RS04000 (KQ224_04000) covR 789228..789917 (-) 690 WP_216807100.1 DNA-binding response regulator Regulator
  KQ224_RS04005 (KQ224_04005) gndA 789999..791426 (-) 1428 WP_216807101.1 NADP-dependent phosphogluconate dehydrogenase -
  KQ224_RS04010 (KQ224_04010) - 791522..792061 (-) 540 WP_174845818.1 DUF177 domain-containing protein -
  KQ224_RS04015 (KQ224_04015) trxB 792071..792988 (-) 918 WP_172036292.1 thioredoxin-disulfide reductase -
  KQ224_RS04020 (KQ224_04020) - 793001..793225 (-) 225 WP_130554666.1 DUF4059 family protein -
  KQ224_RS04025 (KQ224_04025) - 793244..794587 (-) 1344 WP_216807102.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26246.08 Da        Isoelectric Point: 5.1939

>NTDB_id=577570 KQ224_RS04000 WP_216807100.1 789228..789917(-) (covR) [Streptococcus parasuis strain H35]
MAKKILIAGKERNLSHFVSMELQKKEYIVDYASTGNEALSLAHETDFDLVLMSFQLSDMSSKELAKELLAIKPATVIIVV
VEPTEVAEHGEDVLTYAVFYVVKPFVISDLVEQISDIFRGRDFIETNCKQVHLHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDVPGQASYIRTVRGFGYTMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=577570 KQ224_RS04000 WP_216807100.1 789228..789917(-) (covR) [Streptococcus parasuis strain H35]
ATGGCTAAGAAAATTTTGATTGCTGGGAAAGAGCGTAATCTTTCACATTTTGTTTCCATGGAACTTCAGAAGAAGGAGTA
TATCGTTGATTATGCTTCAACAGGGAATGAAGCTTTATCACTAGCTCATGAGACAGACTTTGATTTGGTTTTGATGAGTT
TCCAATTATCCGATATGTCCAGCAAGGAGTTGGCTAAGGAGCTTCTTGCAATCAAACCTGCTACGGTGATAATTGTAGTT
GTCGAACCAACAGAAGTGGCTGAACATGGGGAAGATGTATTGACGTATGCGGTATTTTACGTTGTGAAGCCATTTGTTAT
TAGTGACTTGGTGGAACAAATTTCCGATATTTTCCGTGGTAGAGATTTTATTGAAACAAATTGTAAACAGGTTCATTTGC
ATGCGGCCTATCGAGATTTAAAAGTTGATTTTCAAAACCGAACGGTCACTCGGGGAGATGAGTTAATCAACTTGACACGG
CGAGAATATGATTTGCTGGCGACGTTGATGAATAGTCCGGAACCAGTAAGCCGAGAACAGCTTCTTGAACGGGTCTGGAA
GTATGAAGCGGCCTCTGAAACCAATGTTGTGGATGTCTATATCCGTTATCTTCGTGGAAAATTAGATGTTCCAGGACAGG
CTTCCTATATTCGGACGGTACGTGGTTTTGGCTATACCATGAGAGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.696

100

0.489
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.038

100

0.445