Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   KQ224_RS00905 Genome accession   NZ_CP076721
Coordinates   178135..179361 (+) Length   408 a.a.
NCBI ID   WP_171989798.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 173135..184361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS00875 (KQ224_00875) - 174148..174483 (+) 336 WP_171989804.1 hypothetical protein -
  KQ224_RS00880 (KQ224_00880) - 174645..175604 (+) 960 WP_174845980.1 ROK family glucokinase -
  KQ224_RS00885 (KQ224_00885) - 175729..176007 (+) 279 WP_216806782.1 hypothetical protein -
  KQ224_RS00890 (KQ224_00890) - 176020..176322 (+) 303 WP_174845978.1 hypothetical protein -
  KQ224_RS00895 (KQ224_00895) - 176375..177214 (+) 840 WP_216806783.1 thymidylate synthase -
  KQ224_RS00900 (KQ224_00900) - 177425..177937 (+) 513 WP_105105845.1 dihydrofolate reductase -
  KQ224_RS00905 (KQ224_00905) clpX 178135..179361 (+) 1227 WP_171989798.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  KQ224_RS00910 (KQ224_00910) yihA 179422..180009 (+) 588 WP_130555334.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  KQ224_RS00915 (KQ224_00915) ndk 180031..180444 (+) 414 WP_172036157.1 nucleoside-diphosphate kinase -
  KQ224_RS00920 (KQ224_00920) lepA 180542..182374 (+) 1833 WP_174845976.1 translation elongation factor 4 -
  KQ224_RS00925 (KQ224_00925) - 182424..182606 (-) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  KQ224_RS00930 (KQ224_00930) - 182738..183043 (+) 306 WP_216806784.1 hypothetical protein -
  KQ224_RS00935 (KQ224_00935) - 183054..183260 (+) 207 WP_216806785.1 excalibur calcium-binding domain-containing protein -
  KQ224_RS00940 (KQ224_00940) - 183378..183950 (+) 573 WP_024392197.1 thymidine kinase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45477.05 Da        Isoelectric Point: 4.5673

>NTDB_id=577559 KQ224_RS00905 WP_171989798.1 178135..179361(+) (clpX) [Streptococcus parasuis strain H35]
MAVKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQVDTKN
ILFIVGGAFDGIEEIIKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVLAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDNVELEFDQDALEEIAKKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=577559 KQ224_RS00905 WP_171989798.1 178135..179361(+) (clpX) [Streptococcus parasuis strain H35]
ATGGCTGTCAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAACCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGACAAGATCGTGCT
AAACGTGCATTGGCAGTGGCTGTTTATAATCACTACAAACGTATTAATTTCCAAGATAGTCGCGATGAAAATGATGTTGA
TTTGCAAAAATCTAACATCTTGATGATTGGCCCGACTGGTTCAGGAAAAACTTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCTGGTTATGTGGGTGAAGATGTTGAAAATATTTTA
CTTAAATTATTGCAGGCAGCAGATTTTAACATTGACCGTGCTGAAAGAGGTATCATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGACGTCTCGGGTGAAGGTGTCCAACAAGCTCTCTTAAAAATTATTG
AAGGAACCGTTGCTAGTGTACCTCCACAAGGTGGACGAAAACACCCTAATCAAGAAATGATTCAAGTCGATACGAAAAAC
ATTCTTTTCATCGTTGGCGGTGCGTTTGATGGTATCGAGGAAATTATTAAGCAACGATTAGGAGAGAAAATCATTGGTTT
TGGTCAAAACAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCTGATGATATTCAAAAATTTGGTA
TTATTCCTGAGTTGATTGGACGATTACCTGTTTTGGCAGCCTTAGACCAATTAACGACAGAGGATTTGATTCGTATTTTG
ACTGAGCCGAAGAATGCTTTGGTAAAACAGTACCAAACTCTTTTATCCTACGATAATGTGGAGTTAGAATTTGACCAGGA
TGCCTTGGAGGAAATTGCCAAAAAGGCTATTGAACGGAAAACAGGTGCACGGGGGCTTCGTTCGATTATTGAAGAAACCA
TGATGGATGTGATGTTTGAAGTTCCTAGTCAAGAGAATGTAAAACGTGTTCGTGTTACAAAAGATGCAGTAGATGGTAAG
GAAAAACCTTTGCTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.863

100

0.841
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.529

0.569