Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CCX78_RS03370 Genome accession   NZ_AP017931
Coordinates   639733..640347 (-) Length   204 a.a.
NCBI ID   WP_011374972.1    Uniprot ID   Q38W54
Organism   Latilactobacillus sakei strain LK-145     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 634733..645347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS03345 (LASAK_00662) - 634855..635181 (-) 327 WP_011374977.1 heavy metal-binding domain-containing protein -
  CCX78_RS03350 (LASAK_00663) - 635198..635563 (-) 366 WP_011374976.1 DUF1304 domain-containing protein -
  CCX78_RS03355 (LASAK_00664) galE 635649..636641 (-) 993 WP_096584663.1 UDP-glucose 4-epimerase GalE -
  CCX78_RS03360 (LASAK_00665) recJ 636786..639098 (+) 2313 WP_096584666.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  CCX78_RS03365 (LASAK_00666) - 639122..639640 (+) 519 WP_096584669.1 adenine phosphoribosyltransferase -
  CCX78_RS03370 (LASAK_00667) dinR/lexA 639733..640347 (-) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  CCX78_RS03375 (LASAK_00668) - 640482..640724 (+) 243 WP_016265356.1 DUF896 domain-containing protein -
  CCX78_RS03380 (LASAK_00669) - 640805..641035 (+) 231 WP_011374970.1 YneF family protein -
  CCX78_RS03385 (LASAK_00670) - 641177..642919 (+) 1743 WP_096584672.1 ABC transporter ATP-binding protein -
  CCX78_RS03390 (LASAK_00671) - 642924..644714 (+) 1791 WP_096584675.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.96 Da        Isoelectric Point: 4.9705

>NTDB_id=57738 CCX78_RS03370 WP_011374972.1 639733..640347(-) (dinR/lexA) [Latilactobacillus sakei strain LK-145]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTPAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=57738 CCX78_RS03370 WP_011374972.1 639733..640347(-) (dinR/lexA) [Latilactobacillus sakei strain LK-145]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTACCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAACCCCGGGCGATCGAGTTAACGCCCGCTGGCCTAACGGCAATTGGGGCGACACCC
CAGAAAATCCCAGTATTAGGGGTGGTTACTGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACTGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAACGCCGGCATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGGAAGGTCGTTGGCCTTTACCGAGATCGCATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(3-65)

Peptidase S24-like (Peptidase_S24)

(84-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593

Multiple sequence alignment