Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LUW75_RS09945 Genome accession   NZ_CP094264
Coordinates   2197172..2198572 (+) Length   466 a.a.
NCBI ID   WP_250335283.1    Uniprot ID   -
Organism   Streptomyces sp. MRC013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2192172..2203572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW75_RS09925 (LUW75_09925) - 2192401..2193231 (-) 831 WP_250337612.1 sugar phosphate isomerase/epimerase -
  LUW75_RS09930 (LUW75_09930) - 2193267..2194195 (-) 929 Protein_1969 Ppx/GppA phosphatase family protein -
  LUW75_RS09935 (LUW75_09935) - 2194350..2195093 (+) 744 WP_250337613.1 hypothetical protein -
  LUW75_RS09940 (LUW75_09940) - 2195101..2196783 (-) 1683 WP_250335282.1 hypothetical protein -
  LUW75_RS09945 (LUW75_09945) radA/sms 2197172..2198572 (+) 1401 WP_250335283.1 DNA repair protein RadA Machinery gene
  LUW75_RS09950 (LUW75_09950) disA 2198713..2199834 (+) 1122 WP_168438873.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  LUW75_RS09955 (LUW75_09955) - 2199865..2200709 (-) 845 Protein_1974 hypothetical protein -
  LUW75_RS09960 (LUW75_09960) - 2200878..2201603 (+) 726 WP_250335284.1 phosphatase PAP2 family protein -
  LUW75_RS09965 (LUW75_09965) - 2201672..2202585 (+) 914 Protein_1976 A/G-specific adenine glycosylase -
  LUW75_RS09970 (LUW75_09970) - 2202793..2203335 (+) 543 WP_250335285.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 48810.87 Da        Isoelectric Point: 7.7533

>NTDB_id=577295 LUW75_RS09945 WP_250335283.1 2197172..2198572(+) (radA/sms) [Streptomyces sp. MRC013]
MAARTRPAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGGAPAVRTTAAGRVSTAAVPIGQVDGRQATARSTGVDE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASADHPTLYVTGEESASQVRLRADRIGALHDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVRLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKVPAGMRVLEVADMGEALRVLPRTRRPSAPAAE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=577295 LUW75_RS09945 WP_250335283.1 2197172..2198572(+) (radA/sms) [Streptomyces sp. MRC013]
ATGGCTGCCCGTACGAGACCCGCCAAGGACCGTCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGTCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTGGAGGAGTACGGCGGCGCACCCGCCGTCCGGACGACGGCGGCCG
GCCGGGTGTCGACGGCGGCGGTGCCGATCGGCCAGGTCGACGGGCGGCAGGCCACCGCCCGCTCGACGGGCGTGGACGAG
TTGGACCGGGTGCTGGGCGGGGGGCTCGTGCCCGGCGCGGTCGTCCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCGAAGGCGGCGAGCGCGGATCACCCGACGCTGTACGTGACGGGCGAGGAGTCGGCGAGCC
AGGTGCGGTTGCGGGCCGACCGGATCGGCGCGCTCCACGACCACCTGTACCTGGCGGCGGAGACGGACCTGTCGGCGGTG
CTGGGCCACCTGGACGCGGTGAAGCCGTCGCTGCTGGTCCTCGACTCCGTCCAGACGGTGGCCTCGCCGGAGATCGACGG
GGCGCCCGGCGGCATGGCGCAGGTGCGGGAGGTGGCCGGGGCGCTGATCCGGGCGTCCAAGGAACGGGGCATGGCCACCC
TCCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCGGGGCCGCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGCAC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTCGTGCGGGGCGTGAAGAACCGGTACGGCGCGACCGACGAGGTGGGCTG
CTTCGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGATCCGAGCGGGCTGTTCCTGACGCGGCGTGCCGAGCCCGTGC
CGGGCACCTGTCTGACGGTCACGCTGGAGGGGCGGCGGCCGCTGGTGGCGGAGGTGCAGGCGCTGACGGTGGACTCCCAG
ATCCCGTCGCCGCGGCGCACGACGTCGGGCCTGGAGACGTCCCGCGTGTCGATGATGCTGGCGGTGCTGGAGCAGCGGGG
GCGGATCAGCGCGCTCGGCAAGCGCGACATCTACAGCGCGACGGTGGGCGGCGTGCGGCTGTCCGAGCCCGCGGCGGACC
TGGCGATCGCGCTGGCTCTGGCGTCGGCGGCGTCCGACACGCCGCTGCCGAAGAACCTGGTGGCGATCGGGGAGGTGGGC
CTCGCCGGGGAGGTGCGGCGGGTGACGGGCGTGCAGCGGCGGCTCTCCGAGGCGCACCGGCTGGGCTTCACGCACGCGCT
GGTGCCGGGGGATCCGGGGAAGGTCCCCGCGGGGATGCGGGTGCTGGAGGTCGCGGACATGGGCGAAGCCCTCCGGGTCC
TCCCCCGTACCCGCCGGCCGTCCGCCCCGGCCGCGGAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(83-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

97.21

0.427
  radA Streptococcus pneumoniae Rx1

42.163

97.21

0.41
  radA Streptococcus pneumoniae D39

42.163

97.21

0.41
  radA Streptococcus pneumoniae R6

42.163

97.21

0.41
  radA Streptococcus pneumoniae TIGR4

42.163

97.21

0.41
  radA Streptococcus mitis SK321

42.163

97.21

0.41
  radA Streptococcus mitis NCTC 12261

42.163

97.21

0.41