Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CCX78_RS02190 Genome accession   NZ_AP017931
Coordinates   427910..428584 (-) Length   224 a.a.
NCBI ID   WP_011375146.1    Uniprot ID   Q38VM7
Organism   Latilactobacillus sakei strain LK-145     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 422910..433584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS02170 (LASAK_00417) nrdG 423402..423983 (+) 582 WP_011375150.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  CCX78_RS02175 (LASAK_00418) - 424229..425524 (+) 1296 WP_011375149.1 PTS sugar transporter subunit IIC -
  CCX78_RS02180 (LASAK_00419) - 425557..426723 (-) 1167 WP_011375148.1 hypothetical protein -
  CCX78_RS02185 (LASAK_00420) - 426833..427900 (-) 1068 WP_096584384.1 HAMP domain-containing histidine kinase -
  CCX78_RS02190 (LASAK_00421) braR 427910..428584 (-) 675 WP_011375146.1 response regulator transcription factor Regulator
  CCX78_RS02195 (LASAK_00422) - 428724..429500 (+) 777 WP_096584387.1 ABC transporter ATP-binding protein -
  CCX78_RS02200 (LASAK_00423) - 429478..431577 (+) 2100 WP_096584390.1 FtsX-like permease family protein -
  CCX78_RS02205 (LASAK_00424) - 431595..432380 (+) 786 WP_016265492.1 DUF975 family protein -
  CCX78_RS02210 (LASAK_00425) - 432451..433380 (-) 930 WP_065825252.1 IS30-like element ISLpl1 family transposase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25960.96 Da        Isoelectric Point: 4.7301

>NTDB_id=57727 CCX78_RS02190 WP_011375146.1 427910..428584(-) (braR) [Latilactobacillus sakei strain LK-145]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIPDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=57727 CCX78_RS02190 WP_011375146.1 427910..428584(-) (braR) [Latilactobacillus sakei strain LK-145]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAAAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCCCGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCCACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTTTCTAAAGTGCCAATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCGATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGCGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGTCAACACGGGCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTCTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATTCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38VM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.575

97.768

0.455
  vicR Streptococcus mutans UA159

34.914

100

0.362

Multiple sequence alignment