Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   MP387_RS04575 Genome accession   NZ_CP094226
Coordinates   936616..939891 (-) Length   1091 a.a.
NCBI ID   WP_242748013.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 931616..944891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS04570 (MP387_04570) rexA 932966..936619 (-) 3654 WP_242748011.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  MP387_RS04575 (MP387_04575) rexB 936616..939891 (-) 3276 WP_242748013.1 ATP-dependent nuclease subunit B Machinery gene
  MP387_RS04580 (MP387_04580) - 939998..940417 (-) 420 WP_242745355.1 EVE domain-containing protein -
  MP387_RS04585 (MP387_04585) - 940410..940871 (-) 462 WP_242745357.1 MarR family transcriptional regulator -
  MP387_RS04590 (MP387_04590) - 941018..941827 (+) 810 WP_061427356.1 Cof-type HAD-IIB family hydrolase -
  MP387_RS04595 (MP387_04595) - 941873..942610 (-) 738 WP_242745359.1 TraX family protein -
  MP387_RS04600 (MP387_04600) aguB 942755..943630 (-) 876 WP_242745361.1 N-carbamoylputrescine amidase -
  MP387_RS04605 (MP387_04605) aguA 943640..944725 (-) 1086 WP_242745363.1 agmatine deiminase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124627.45 Da        Isoelectric Point: 5.7802

>NTDB_id=577224 MP387_RS04575 WP_242748013.1 936616..939891(-) (rexB) [Streptococcus oralis strain 1648]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAELDPKELRVYGAIKQDPQFIQQLMELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
SQLAQGSQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERVVDLLHQKGAEIVIGAYASKKAYISPFSEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKMDSFDKASHLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
DHPELSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDDFEQYLRYLGINGLPAFQQNFTKSHHGKFDLERLNALRLRVLAPLETLFASRKQKAENLLQKWNTFLKNAALSK
QMQDLTATMETLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPMT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGVQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENE
SKESAYLQELVSFGFSRIEKKIHQKSLSKDDMGSYHSLLSSLVAYHQQAGSSENEKDVTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEEFRLRPDARSHGNFLHRIFERALKLPA
ENPFDQRLEQAIKETSQEREFEAIYQESLEAQFIKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLLAVKSLA
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLEVADGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=577224 MP387_RS04575 WP_242748013.1 936616..939891(-) (rexB) [Streptococcus oralis strain 1648]
ATGAAATTACTGTATACTGATATTCGGACTTCTTTGACTGAAATTTTAACGAGAGAGGCAGAAGAGCTAGTTGCTGCTGG
CAAGCGTGTTTTCTACATCGCACCCAACTCTCTTTCATTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTACCTGGTCTTGAATGATTTGCCGACTAAAACTAGT
CTAGATGACATCGGGCTTGGGATGGCTTTTTATAAGTGCCTTGCGGAACTTGATCCTAAAGAATTGCGAGTTTATGGTGC
GATTAAGCAGGATCCTCAATTTATCCAGCAGTTGATGGAACTTTATCACGAGATGACGACTGCTCAGATGAGCTTTTTGG
ACTTGGAAAGTTTGACGGATGAGGACAAGCGGGCAGACTTACTCTTGATTTTTGAGAAAGTGACTGCTTATCTCAATCAA
AGCCAGTTGGCTCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGCAGTGATTTCAGTCA
GATTGCCTTGGTTATTGATGGATTTACTCGTTTTTCTGCCGAGGAAGAGCGTGTAGTGGATCTACTTCATCAAAAAGGTG
CCGAGATTGTTATTGGGGCCTATGCAAGCAAGAAAGCCTATATCAGTCCGTTCTCTGAAGGGAATCTCTACCAAGCCAGT
GTGGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACTCATGAAAAAATGGATAG
TTTTGACAAGGCCTCTCATTTGCTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTAGATGTTGATGAGAAGGACCGTG
AAAATCTGCAAATCTGGTCTTGTTTGACGCAAAAAGAAGAGCTGGAATTAGTAGCCCGTAGCATTCGTCAGAAATTACAT
GACCATCCAGAACTGAGTTACAAGAATTTCCGTATTTTGCTGGGTGATGTGGCATCTTACCAGCTATCGCTGAAAACTAT
TTTTGACCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGGCCCATCATCCTCTGACTCAGTATGTGGAGT
CTATTTTACGTTTAAAACGTTACCGTTTCCGTCAGGAGGATTTGATTAATCTCCTCAGAACTGGTCTATATACCGACCTT
AGTCAGGCTGATATTGATGATTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTTCAGCAGAACTT
TACCAAATCCCATCATGGAAAATTTGATTTAGAGCGTTTAAATGCTCTTCGTCTGCGCGTTTTGGCGCCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAAGGCTGAAAATCTCTTGCAAAAGTGGAATACTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGACTTGACAGCTACTATGGAAACTCTAGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCCTTCTGCCATGT
TTTAGAACAATTTGCGACGGTTTTTGCTGGTTCACAAGTTAGCCTGGAGGACTTCCTGGCCTTGCTTCATTCTGGGATGA
GTTTGTCTCAGTATCGCACAATACCAGCAACAGTGGACACCGTTCTGGTGCAGAGTTACGATCTGATTGCACCTATGACC
GCTGACTTTGTCTATGCCATCGGTCTGACTCAGGATCATTTGCCAAAAATTGCGCAAAACACCAGTCTTTTGACAGATGA
AGAACGACAAAGCCTAAACCAAGCAACTGAGGAGGGAGTGCAATTACTGATTGCAAGTAGCGAAAATCTCAAGAAAAATC
GCTATACCATGCTTTCTTTAGTCAATGCTGCTCGTAAGCAGTTGGTGTTGTCAGCTCCAAGTCTCCTCAATGAAAATGAG
AGCAAGGAATCGGCCTATCTTCAGGAACTGGTGAGTTTTGGATTTAGCCGAATAGAGAAGAAGATTCATCAAAAAAGTCT
GTCTAAGGATGATATGGGTTCTTATCACAGTCTTTTGTCTAGTCTGGTTGCCTATCACCAGCAGGCAGGTTCAAGTGAAA
ATGAAAAAGATGTCACCTTTGTCAAGGTTTTGGCTCGTGTCATGGGGAAAAAACTAGATCAAAAAGGTCTTACAAATCCT
GCACTCCCAACTAGTCCAAGCAGCAAGCCATTAGAGAAAGAGACCTTGCAGGCTCTCTACCCTGCTGACAAGGAGTTTTA
CCTGTCTACTTCTGGTTTGACAGAATTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTTCGCCTGCGTCCAGATGCTCGCAGTCATGGGAATTTCTTGCATCGTATTTTTGAACGTGCCTTGAAACTACCTGCT
GAAAATCCGTTTGACCAGCGTTTGGAGCAAGCTATCAAGGAAACCAGCCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAATTTATCAAGGAAGTTCTACTTGATGTCGCGCGAACTACGGGCCACATCCTACGTCATAATCCAG
CTATCGAAACCATTCAAGAGGAAGCAACATTTGGTGGTAAAGATCAGGCCTTTATTCAATTGGATAATGGTCGGAGTGTC
CATGTGCGTGGCAAGGTTGACCGTATTGACCGTTTGAAAGCTGATGGAGCACTGGGAGTGGTAGACTACAAGTCTAGTTT
GACCCAGTTCCAGTTTCCTCATTTCTTCAATGGGCTTAATTCCCAACTGCCTACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGTGCTATGTACTTAGAAATGGCTGAACCCGTCCAATCTTTATTAGCTGTTAAAAGTCTGGCA
GGAGCAGTAGTAGAAGCCAGCAAATCAATGAAATACCAGGGACTCTTTTTAGAGAAAGAAAGCAGTCACTTGGGCGAATT
TTACAACAAAAACAAGGCTAACCAGCTGACAGACGAGGAATTCCAGCTCTTACTAGACTATAATGCCCATCTGTACAAGA
AGGCTGCTGAAAAGATTCTAGAAGGCCAGTTCGCCATCAATCCCTATACCGAAAATGGCAGAAGCATTGCCCCGTACGTT
CAGCAACATCAAGCCATTACAGGTTTTGAAGCCAATTACCACTTGGGACAAGCCCGTTTCCTAGAAAAGTTAGAAGTAGC
TGACGGCAAGCGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

90.192

100

0.902