Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   MP387_RS04570 Genome accession   NZ_CP094226
Coordinates   932966..936619 (-) Length   1217 a.a.
NCBI ID   WP_242748011.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 927966..941619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS04545 (MP387_04545) - 929151..929930 (-) 780 WP_242748005.1 ribonuclease HII -
  MP387_RS04550 (MP387_04550) ylqF 929917..930768 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -
  MP387_RS04555 (MP387_04555) - 930984..931199 (+) 216 WP_242748007.1 AbrB family transcriptional regulator -
  MP387_RS04560 (MP387_04560) - 931183..931539 (+) 357 WP_000560797.1 type II toxin-antitoxin system PemK/MazF family toxin -
  MP387_RS04565 (MP387_04565) - 931573..932751 (-) 1179 WP_242748009.1 hypothetical protein -
  MP387_RS04570 (MP387_04570) rexA 932966..936619 (-) 3654 WP_242748011.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  MP387_RS04575 (MP387_04575) rexB 936616..939891 (-) 3276 WP_242748013.1 ATP-dependent nuclease subunit B Machinery gene
  MP387_RS04580 (MP387_04580) - 939998..940417 (-) 420 WP_242745355.1 EVE domain-containing protein -
  MP387_RS04585 (MP387_04585) - 940410..940871 (-) 462 WP_242745357.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140402.72 Da        Isoelectric Point: 5.0177

>NTDB_id=577223 MP387_RS04570 WP_242748011.1 932966..936619(-) (rexA) [Streptococcus oralis strain 1648]
MKPISFLTEEEIQKLQEAEASSSKEQKKTAEQIQAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAASELKERLEKKISQQIQETDDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLLLK
NEVFHQVFEEHYQGENKENFSRLVKNFAGRGKDERGLRQQVFKIYDFLQSTSSPQKWLNESFLKGFEKADFANEKEKLIE
QIKQALWDLESFFRYHLDNDAKEFPKAAYLENVQLVLDEISSLNQESDSQAYRAVLARIVAISKEKNGRALANSSRKADL
KPLADAYNEERKTQFAKLGQLADQITILDYQERYHVDTWDLAKTFQNFMSDFVEAYRERKRQENAFEFADISHYTIEILE
NFPQVREAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGKLIL
LKENFRSSSEVLSATNDVFGRLMDQEVGEINYDSMHQLVFANTKLTPNPDNKAEFLLYDKGDSGQEKEESDEDTKLTGEM
RLVIKEILKLHQEKGVAFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFSFDEDELARLSLQKAEDKVQENLYEKLVNAQRQVTDQKELIHKDLAEKLNQFMDILDSWRLYAKTHSLYDLI
WKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPLKDAVELMTIHK
SKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKVDTGAVEAHYPKTIKLSIPSLTYTQNEEELQLASYSEQ
MRLLYVAMTRAERKLYLVGKGSREKLEAKEYPAANNGKLDGNTRLQARNFQDWIWAISKVFAKDNLNFSYRFIGEDQLTR
EAIGELENKSPLQDSSQSSNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEVTNQTQST
EKKISFDLPDFSTKEKVTGAEVGSATHELMQRIDLSQQPTLASLTETLKQVQTSPAVRDKINLSKILAFFDTALGQEILA
NTDLLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEDRIVLFDYKTDRYDQPSQLIDRYRSQLALYGEALSRAYSIENI
EKYLIILGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=577223 MP387_RS04570 WP_242748011.1 932966..936619(-) (rexA) [Streptococcus oralis strain 1648]
ATGAAGCCCATTTCTTTTTTAACTGAGGAAGAAATTCAAAAACTGCAAGAAGCAGAAGCGAGTTCAAGCAAGGAACAGAA
GAAAACTGCCGAGCAAATCCAAGCCATTTATACTGCTGGGCAAAACATCCTAGTATCAGCGTCTGCTGGTTCAGGGAAAA
CCTTTGTCATGGCAGAACGCATTCTGGATCAGTTAGCGCGTGGTGTCGAAATTTCTCAACTCTTTATCTCGACCTTTACC
GTTAAGGCTGCTAGCGAACTTAAGGAACGTTTGGAGAAGAAAATCAGCCAACAAATCCAAGAAACCGATGATGTTGATCT
CAAACAACACTTGGGACGCCAGTTGGCAGACCTACCAAACGCTGCCATCGGAACCATGGACTCCTTCACACAAAAATTCC
TTGGCAAACATGGCTATTTGATTGATATCGCACCGAACTTCCGTATTTTGCAAAATGAAAGCGAACAGTTACTCTTAAAA
AACGAAGTTTTTCATCAGGTGTTTGAAGAGCATTACCAAGGTGAAAATAAAGAGAACTTTAGTCGTTTAGTGAAAAACTT
TGCTGGACGAGGCAAGGATGAACGTGGTCTGCGCCAGCAAGTCTTCAAAATCTATGATTTCCTCCAATCCACCAGCAGTC
CACAAAAATGGTTGAACGAGTCTTTTCTCAAAGGGTTTGAAAAAGCTGACTTTGCAAATGAAAAAGAGAAACTAATTGAG
CAAATCAAGCAGGCGCTTTGGGACTTGGAAAGTTTCTTCCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCAAAAGC
TGCCTATTTAGAAAATGTGCAGCTGGTTCTGGATGAAATTAGCTCCTTAAATCAAGAGTCCGATAGCCAGGCTTATCGAG
CAGTGCTTGCGCGTATTGTCGCAATATCGAAAGAAAAGAATGGTCGAGCTCTAGCTAACTCTAGTCGAAAGGCTGATTTA
AAGCCACTGGCTGATGCCTACAACGAAGAGAGAAAGACCCAGTTTGCTAAACTAGGACAACTAGCAGACCAGATAACCAT
TCTCGACTATCAAGAGCGTTATCATGTAGACACCTGGGATCTAGCTAAAACTTTCCAAAACTTTATGAGCGATTTTGTGG
AAGCTTATCGTGAACGTAAACGTCAGGAAAATGCCTTTGAATTCGCTGATATCAGTCATTACACCATTGAGATTTTAGAG
AATTTCCCACAAGTTCGTGAGGCTTATCAGGAACGATTCCATGAAGTCATGGTCGATGAGTATCAGGATACTAACCACAT
TCAAGAACGAATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAGTCCATCTACCGTT
TCCGTCAGGCAGACCCGCAGATTTTCAATGAAAAATTTCAACGCTATGCGCAAAATCCTCAAGAAGGAAAGCTGATTTTG
CTCAAGGAAAATTTCCGTAGTAGTTCAGAAGTGCTGTCAGCAACCAATGATGTTTTTGGACGCCTTATGGACCAAGAGGT
CGGTGAAATCAACTATGACAGCATGCACCAGCTTGTTTTTGCCAATACCAAACTGACTCCTAATCCAGACAACAAGGCAG
AATTTCTCCTCTACGATAAGGGCGATAGTGGGCAAGAGAAAGAAGAAAGTGATGAAGACACGAAACTCACTGGGGAAATG
CGCCTTGTCATCAAGGAAATCTTAAAGCTACATCAAGAAAAAGGTGTGGCCTTCAAAGAAATTGCCCTTCTGACTTCCAG
TCGCAGTCGTAATGACCAGATTCTACTTGCCCTGTCTGAGTACGGGATACCTGTCAAAACCGACGGTGAGCAAAACAACT
ACCTCCAATCCTTAGAAGTACAAGTCATGTTGGACACCCTTCGTGTCATCCACAATCCCCTGCAAGACTACGCCTTGGTT
GCCCTTATGAAGTCTCCTATGTTTAGTTTCGATGAGGACGAGTTGGCGCGTTTATCTCTTCAGAAAGCAGAAGATAAAGT
ACAAGAGAATCTTTATGAGAAACTAGTTAATGCTCAAAGACAGGTAACTGATCAGAAAGAGTTAATTCACAAGGACCTAG
CTGAAAAATTAAATCAATTCATGGATATCTTGGATTCTTGGCGCTTGTATGCCAAAACCCACTCTCTCTATGACTTGATT
TGGAAGATTTACAACGACCGTTTTTATTATGACTATGTTGGGGCTTTGCCGAACGGACCTGCTAGACAGGCTAATCTCTA
TGCCCTAGCTCTGCGAGCTGATCAGTTTGAAAAGAGCAATTTCAAGGGCTTGTCTCGTTTTATCCGTATGATTGACCAAG
TTTTAGAGGCTCAGCATGACCTCGCAAGCGTAGCTGTCGCTCCACTTAAAGATGCCGTGGAACTCATGACCATTCACAAG
AGCAAAGGACTGGAGTTTCCTTATGTCTTTATCCTCAACATGGATCAGGACTTCAACAAGCAAGACTCAATGTCAGAAGT
TATTCTCAGTCGTCAAAATGGGCTTGGTGTCAAATACATTGCCAAAGTGGATACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATCAAACTCTCCATTCCCAGCCTTACCTATACCCAGAATGAAGAAGAATTGCAACTGGCTAGCTATTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACGAGGGCGGAGAGAAAACTTTATCTTGTCGGTAAGGGGTCTCGTGAAAAGCTAGA
AGCCAAGGAATACCCAGCAGCAAACAATGGAAAATTAGATGGCAATACCAGACTGCAAGCAAGAAATTTCCAAGATTGGA
TCTGGGCTATCAGTAAAGTATTTGCCAAGGACAATCTCAACTTTAGCTATCGTTTTATTGGTGAAGACCAGTTGACTAGA
GAAGCTATCGGAGAGTTGGAAAACAAGAGTCCTCTACAAGATAGCTCTCAATCAAGCAACCGTCAGTCAGAGACCATCAA
AGAAGCTCTGGAAATGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGCGCAGCCATTGAACTACCAAGTGTTCAAA
CCCCAAGCCAAATCAAGAAATTCTACGAACCGGTTATGGATATGGAAGGGGTAGAAGTTACTAACCAAACTCAATCAACT
GAGAAGAAAATCAGCTTTGATTTACCTGATTTTTCAACTAAAGAAAAGGTAACTGGAGCTGAGGTTGGTAGTGCCACTCA
TGAACTCATGCAGAGAATTGACCTTAGTCAGCAACCAACACTTGCTAGCTTGACAGAGACTCTCAAACAAGTTCAGACTA
GTCCAGCTGTAAGAGACAAGATCAATCTTTCTAAAATTCTCGCATTCTTTGATACAGCACTTGGTCAGGAAATTCTCGCT
AATACCGACCTTCTCTACCGCGAGCAACCTTTCTCCATGCTTAAACGAGACCAAAAGAGTCAGGAAGACTTCGTTGTCCG
TGGGATCTTGGACGGCTATCTGCTTTATGAGGATCGTATCGTTCTTTTCGACTACAAGACAGACCGTTACGATCAACCAA
GTCAACTCATAGACCGCTATCGTAGTCAGTTAGCCCTATACGGAGAGGCTTTATCTCGTGCCTATTCAATTGAAAACATA
GAAAAATACTTGATTATACTAGGTAAAGATGAGGTTCAAGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1055-1194)

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

91.619

100

0.916