Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   MP387_RS01685 Genome accession   NZ_CP094226
Coordinates   356533..357582 (+) Length   349 a.a.
NCBI ID   WP_242747219.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 351533..362582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS01665 (MP387_01665) dnaJ 353453..354589 (+) 1137 WP_001066315.1 molecular chaperone DnaJ -
  MP387_RS01670 (MP387_01670) - 355030..355317 (-) 288 WP_000777744.1 hypothetical protein -
  MP387_RS01675 (MP387_01675) - 355327..355737 (-) 411 WP_242747216.1 HIT family protein -
  MP387_RS01680 (MP387_01680) pptA 355805..356536 (+) 732 WP_242747218.1 ABC transporter ATP-binding protein Regulator
  MP387_RS01685 (MP387_01685) pptB 356533..357582 (+) 1050 WP_242747219.1 ABC transporter permease Regulator
  MP387_RS01690 (MP387_01690) - 357630..358424 (+) 795 WP_000363019.1 phosphotransferase family protein -
  MP387_RS01695 (MP387_01695) trmB 358421..359056 (+) 636 WP_033629357.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  MP387_RS01700 (MP387_01700) rimP 359183..359662 (+) 480 WP_000338690.1 ribosome maturation factor RimP -
  MP387_RS01705 (MP387_01705) nusA 359705..360841 (+) 1137 WP_000032277.1 transcription termination factor NusA -
  MP387_RS01710 (MP387_01710) - 360863..361156 (+) 294 WP_000857560.1 YlxR family protein -
  MP387_RS01715 (MP387_01715) - 361149..361448 (+) 300 WP_001041402.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40328.31 Da        Isoelectric Point: 9.7982

>NTDB_id=577197 MP387_RS01685 WP_242747219.1 356533..357582(+) (pptB) [Streptococcus oralis strain 1648]
MKDLFLKRKQAFRKECVGYLRYVLNDHFVLFLLVLIGFLAYQYSQLLQDFPENHWPILLFLVIVSTLLLAWGGIATYMEG
PDKLFLLVSEEEVKSHLKGQTVRSLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLIYVLLLGAGKYLLFRQKASKCFTENG
IDWDYVIAQESKRKQVLLRFFALFTQVKGVSNSVKRRAYLDFILKVVQKVPSKIWQNLYLRSYLRNGDLFALSLRLLFLS
LLAVIFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLEKGEKEKGLKQIVLGVGSAVLLLELLVGAVVFQE
KVALLALVGAGLFLQLFYLPYQLKRLVDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=577197 MP387_RS01685 WP_242747219.1 356533..357582(+) (pptB) [Streptococcus oralis strain 1648]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAATGTGTCGGTTATCTGCGCTATGTTCTAAATGACCA
CTTTGTCTTGTTCCTGCTGGTTCTCATTGGTTTTCTAGCCTACCAGTACAGTCAACTCTTGCAAGATTTTCCTGAAAATC
ATTGGCCTATTCTCTTGTTTTTAGTAATAGTATCTACCTTGCTTTTGGCTTGGGGAGGAATCGCGACCTACATGGAAGGA
CCTGACAAGCTCTTTCTCTTAGTCAGTGAAGAGGAGGTTAAGTCTCACCTCAAAGGGCAGACAGTGCGCTCACTGGTCTT
TTGGCTCTTTGTCCAAACCCTTTTCTTGCTTTTATTTGCGCCCTTATTTTTAGCCATGGGTTATGGCTTGCCAGTTTTTC
TCATCTATGTGCTTTTATTGGGAGCTGGGAAATACCTGCTCTTTCGTCAAAAAGCCAGTAAATGTTTTACTGAGAACGGA
ATTGACTGGGACTATGTGATTGCCCAAGAAAGCAAGCGCAAGCAAGTCTTGCTTCGTTTCTTTGCTCTCTTTACTCAGGT
CAAGGGCGTTTCCAATAGTGTCAAACGTCGCGCTTATCTGGATTTTATCCTTAAAGTAGTTCAGAAAGTGCCGAGCAAGA
TTTGGCAAAACCTCTATCTCCGTTCTTATCTGCGAAATGGAGACCTCTTTGCCCTCAGTTTGCGCCTTTTGTTCCTATCC
TTGTTAGCTGTGATCTTTATTGAGCAATCTTGGATCGCTACAGCGGTGGTAGTGCTGTTTAACTACCTCTTGCTCTTTCA
GTTACTCGCTCTCTATCATGCCTTTGATTACCAATACTTGACCCAGCTCTTTCCGCTAGAAAAAGGGGAGAAAGAAAAGG
GATTGAAACAGATTGTACTTGGTGTGGGAAGTGCAGTTCTTTTGTTAGAATTGCTGGTCGGAGCAGTGGTTTTTCAAGAA
AAAGTAGCCTTGTTGGCTCTTGTAGGGGCTGGTCTCTTCCTACAATTGTTTTATTTGCCTTACCAACTAAAAAGATTGGT
TGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.286

100

0.464