Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPF93_RS02895 Genome accession   NZ_CP094178
Coordinates   595682..596233 (+) Length   183 a.a.
NCBI ID   WP_245074433.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 590682..601233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF93_RS02880 (MPF93_02880) cysS 590861..592258 (-) 1398 WP_245074427.1 cysteine--tRNA ligase -
  MPF93_RS02885 (MPF93_02885) murJ 592259..593719 (-) 1461 WP_245074429.1 murein biosynthesis integral membrane protein MurJ -
  MPF93_RS02890 (MPF93_02890) - 593813..595657 (+) 1845 WP_245074431.1 FapA family protein -
  MPF93_RS02895 (MPF93_02895) ruvA 595682..596233 (+) 552 WP_245074433.1 Holliday junction branch migration protein RuvA Machinery gene
  MPF93_RS02900 (MPF93_02900) - 596259..597700 (+) 1442 Protein_554 DUF3519 domain-containing protein -
  MPF93_RS02905 (MPF93_02905) - 598350..599075 (-) 726 WP_245074435.1 NYN domain-containing protein -
  MPF93_RS02910 (MPF93_02910) ruvC 599207..599680 (+) 474 WP_245074437.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20151.79 Da        Isoelectric Point: 8.0466

>NTDB_id=577142 MPF93_RS02895 WP_245074433.1 595682..596233(+) (ruvA) [Helicobacter pylori strain Hpfe060]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPVCNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=577142 MPF93_RS02895 WP_245074433.1 595682..596233(+) (ruvA) [Helicobacter pylori strain Hpfe060]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAACTTGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGTGTGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(141-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361