Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CNZW441b_RS07005 Genome accession   NZ_CP076657
Coordinates   1377503..1378918 (-) Length   471 a.a.
NCBI ID   WP_131163124.1    Uniprot ID   A0A4Q9JVT5
Organism   Campylobacter novaezeelandiae strain W441b     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1372503..1383918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZW441b_RS06985 (CNZW441b_1391) ctsF 1373482..1374678 (-) 1197 WP_131163126.1 type II secretion system F family protein Machinery gene
  CNZW441b_RS06990 (CNZW441b_1392) ctsE 1374675..1376234 (-) 1560 WP_131163135.1 GspE/PulE family protein Machinery gene
  CNZW441b_RS06995 (CNZW441b_1393) - 1376313..1376888 (-) 576 WP_187347522.1 transformation system protein -
  CNZW441b_RS07000 (CNZW441b_1394) - 1376890..1377510 (-) 621 WP_131163125.1 ATP-binding protein -
  CNZW441b_RS07005 (CNZW441b_1395) ctsD 1377503..1378918 (-) 1416 WP_131163124.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CNZW441b_RS07010 (CNZW441b_1396) - 1378896..1379234 (-) 339 WP_243830582.1 general secretion pathway protein GspB -
  CNZW441b_RS07015 (CNZW441b_1397) nifJ 1379241..1382798 (-) 3558 WP_216681355.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CNZW441b_RS07020 (CNZW441b_1398) rpsI 1383034..1383423 (-) 390 WP_216681356.1 30S ribosomal protein S9 -
  CNZW441b_RS07025 (CNZW441b_1399) rplM 1383425..1383850 (-) 426 WP_131163121.1 50S ribosomal protein L13 -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53823.79 Da        Isoelectric Point: 7.2449

>NTDB_id=577092 CNZW441b_RS07005 WP_131163124.1 1377503..1378918(-) (ctsD) [Campylobacter novaezeelandiae strain W441b]
MIKFILIKFLFFTSFIYAIDCQKRLFNIKSNENLTIKESLEELSNYCSFSIIVKDKLAKEKLLQTQIININQMSLEEIFK
FFLEDNDLNYSFNGKILKISAIETKMFKISYISSIREGQSVTKASVDAKPKQAEYIQSEDIEDNMIKSMEKFDFWKNIEQ
EITALLYNTYDEIEVKKPIINSNAGIIIVSGTRTQLLKVKDYLQKLEQRLKKQVIIDVSIIAVSLNKTHSSGINWQKFNI
DFSSKTNDGKNSFIGVENSKGFVKNLGFRADLNFDSILNFLSQNGKTKVLSNPKLMALNNQQAIISIGDTINYQVKDTSK
GTENGTTVSESFSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYLEDNQRQKEPRTIAPDTIQKKLSTVVQVENNQ
TLILGGLISHNQNKNENEVNFFSKIPLIGELFKSNDELSSISEIVFIITPTLVENFRNVPSLKELGFRHYE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=577092 CNZW441b_RS07005 WP_131163124.1 1377503..1378918(-) (ctsD) [Campylobacter novaezeelandiae strain W441b]
ATGATAAAATTTATATTGATTAAGTTTTTATTTTTTACCTCTTTTATTTATGCAATAGATTGTCAAAAAAGACTTTTTAA
TATAAAATCTAATGAAAATTTAACTATAAAAGAAAGTTTAGAAGAACTTTCAAATTATTGTTCATTTAGCATTATTGTAA
AAGATAAATTAGCTAAAGAGAAACTTTTACAAACTCAAATTATTAATATAAATCAAATGTCTTTAGAAGAAATTTTTAAA
TTTTTTCTTGAGGATAATGATTTAAATTATAGTTTTAATGGAAAGATTTTAAAAATTTCAGCTATTGAAACAAAAATGTT
TAAAATTAGTTATATTAGCTCCATACGGGAAGGACAAAGTGTTACAAAGGCTTCAGTAGACGCTAAACCAAAGCAAGCTG
AATATATTCAAAGCGAAGATATAGAAGATAATATGATTAAAAGTATGGAAAAATTCGATTTTTGGAAAAATATTGAACAA
GAAATTACAGCACTTTTATATAATACTTATGATGAAATAGAAGTTAAAAAGCCTATCATTAACTCCAATGCTGGAATTAT
TATAGTAAGTGGAACAAGAACTCAGTTATTAAAAGTTAAAGATTATTTGCAAAAACTTGAACAAAGACTTAAAAAACAAG
TTATTATTGATGTAAGTATTATTGCGGTATCTTTGAATAAAACCCATTCTAGTGGAATTAATTGGCAAAAATTTAATATC
GATTTTAGTTCTAAAACCAATGATGGTAAAAATTCTTTTATAGGGGTTGAAAATAGTAAAGGTTTTGTTAAGAATTTGGG
TTTTAGAGCTGATTTAAATTTTGATTCTATTTTAAATTTTCTTTCTCAAAATGGCAAAACAAAAGTTTTATCAAATCCTA
AACTTATGGCTTTAAATAATCAGCAAGCTATTATTTCTATCGGAGATACAATTAATTATCAAGTAAAAGATACTTCTAAA
GGAACAGAAAATGGAACTACTGTGAGTGAGAGTTTTAGTAATTATTCTATTTTCATAGGAATTTTGCTGAACATCCTACC
AGAAATTTCAGATGATGGAAAAATAATGCTTAGAATTAACCCAAGTCTAAGTGATTTTAAATATTTAGAAGACAATCAAA
GGCAAAAAGAGCCAAGAACAATAGCACCCGATACCATACAAAAAAAGCTTTCAACTGTTGTACAAGTAGAAAATAATCAA
ACTCTTATTTTAGGAGGTTTAATTAGTCATAACCAAAATAAAAATGAAAATGAAGTTAATTTCTTTTCTAAAATACCTTT
AATTGGAGAACTTTTTAAATCAAATGATGAACTTTCTAGTATAAGTGAAATAGTATTTATCATAACACCTACATTAGTAG
AAAACTTTAGAAATGTTCCAAGTTTAAAAGAGTTAGGATTTAGGCATTATGAGTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9JVT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

72.785

100

0.732