Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   CNZW441b_RS06985 Genome accession   NZ_CP076657
Coordinates   1373482..1374678 (-) Length   398 a.a.
NCBI ID   WP_131163126.1    Uniprot ID   A0A4Q9JV06
Organism   Campylobacter novaezeelandiae strain W441b     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368482..1379678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZW441b_RS06955 (CNZW441b_1385) modB 1369149..1369832 (-) 684 WP_131163138.1 molybdate ABC transporter permease subunit -
  CNZW441b_RS06960 (CNZW441b_1386) - 1369833..1370225 (-) 393 WP_131163137.1 molybdenum-pterin-binding protein -
  CNZW441b_RS06965 (CNZW441b_1387) modA 1370222..1370956 (-) 735 WP_131164086.1 molybdate ABC transporter substrate-binding protein -
  CNZW441b_RS06970 (CNZW441b_1388) - 1371004..1371693 (-) 690 WP_131163129.1 malonyl-[acyl-carrier protein] O-methyltransferase BioC -
  CNZW441b_RS06975 (CNZW441b_1389) - 1371690..1372301 (-) 612 WP_131163128.1 pimeloyl-ACP methyl esterase BioG family protein -
  CNZW441b_RS06980 (CNZW441b_1390) - 1372298..1373437 (-) 1140 WP_131163127.1 pyridoxal phosphate-dependent aminotransferase family protein -
  CNZW441b_RS06985 (CNZW441b_1391) ctsF 1373482..1374678 (-) 1197 WP_131163126.1 type II secretion system F family protein Machinery gene
  CNZW441b_RS06990 (CNZW441b_1392) ctsE 1374675..1376234 (-) 1560 WP_131163135.1 GspE/PulE family protein Machinery gene
  CNZW441b_RS06995 (CNZW441b_1393) - 1376313..1376888 (-) 576 WP_187347522.1 transformation system protein -
  CNZW441b_RS07000 (CNZW441b_1394) - 1376890..1377510 (-) 621 WP_131163125.1 ATP-binding protein -
  CNZW441b_RS07005 (CNZW441b_1395) ctsD 1377503..1378918 (-) 1416 WP_131163124.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CNZW441b_RS07010 (CNZW441b_1396) - 1378896..1379234 (-) 339 WP_243830582.1 general secretion pathway protein GspB -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 46402.42 Da        Isoelectric Point: 9.7344

>NTDB_id=577090 CNZW441b_RS06985 WP_131163126.1 1373482..1374678(-) (ctsF) [Campylobacter novaezeelandiae strain W441b]
MKTYELSFLENGIKAKKIIKAKNLNMAQALALKQNLNILELTEIKRENFSFFKISNEDFVLFFKEFSFLLEVGLSVLEAL
KELEKSTFKKELKKTIKKIDENLSLGQSLSEAFKNSRFNLSHSELALIKIAENTGKLSYVFNQIVLIRQKTIKAKKSFIK
SIRYPLIVLVSIFISFIFLILFVIPQFKNLFDNFNIELPLITQILLQTYDFLNSYFFLISILFLLFVCLFVFCYKKFYFF
TLISDYCFLKIPIISKLILYYQSYHFFSVFSLLLKSGISLSKALEFAIFGIKNEFFKNKLTQILSLLEQGLELSEAFRRT
KVFDPLVISMLNIAMKSSKLDILSEQISLFYEDKQESMMEKILSLIEPLMTLFVASLVLLLALGIFLPLWEFNSTYAF

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=577090 CNZW441b_RS06985 WP_131163126.1 1373482..1374678(-) (ctsF) [Campylobacter novaezeelandiae strain W441b]
ATGAAAACTTATGAACTTAGTTTTTTAGAAAATGGAATAAAAGCAAAAAAAATAATTAAAGCTAAAAATCTAAATATGGC
ACAAGCTTTAGCTTTAAAACAGAATTTGAACATTTTAGAATTAACAGAAATTAAGAGAGAGAATTTTAGTTTTTTTAAAA
TTTCAAATGAAGATTTTGTTTTATTTTTTAAAGAATTTTCGTTTTTGCTAGAAGTAGGTTTGAGTGTTTTAGAAGCCTTA
AAGGAACTTGAAAAAAGCACTTTTAAAAAAGAACTTAAAAAAACAATAAAAAAGATAGATGAAAATTTAAGTTTAGGACA
GAGTTTAAGCGAGGCCTTTAAAAATTCTCGTTTTAATTTAAGTCATAGTGAATTAGCCCTTATAAAAATAGCTGAAAATA
CAGGAAAACTTTCTTATGTTTTTAATCAAATTGTTTTAATAAGACAAAAAACCATAAAAGCAAAAAAATCTTTTATAAAA
TCAATCAGATATCCTTTAATAGTGCTAGTATCTATTTTTATTTCTTTTATTTTTTTGATATTATTTGTTATTCCGCAATT
TAAAAATTTATTTGATAATTTTAATATAGAACTTCCTTTAATTACCCAAATTTTACTTCAAACCTATGATTTTTTAAATT
CTTATTTTTTTCTTATTTCAATTTTATTTTTATTGTTTGTATGTTTATTTGTATTTTGTTATAAAAAATTTTATTTTTTT
ACCTTGATAAGTGATTATTGTTTTTTGAAAATTCCAATTATTTCTAAGCTTATTTTATATTATCAAAGTTATCATTTTTT
TAGTGTATTTTCTTTACTTTTAAAAAGTGGAATTTCTCTAAGCAAGGCTTTAGAATTTGCTATTTTTGGGATAAAAAATG
AATTTTTTAAAAATAAATTGACTCAAATTTTATCTTTACTTGAGCAAGGTTTAGAGCTTAGTGAAGCTTTTAGAAGAACT
AAAGTTTTTGACCCATTAGTTATTTCTATGCTAAATATTGCTATGAAAAGTTCTAAACTTGATATTTTAAGTGAGCAAAT
TTCTTTGTTTTATGAAGATAAGCAAGAAAGTATGATGGAAAAAATATTAAGTTTGATCGAGCCTTTGATGACTTTATTTG
TAGCTTCTTTGGTGCTTTTATTGGCTTTAGGTATATTTTTACCTTTATGGGAATTTAATAGCACTTATGCTTTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(62-185)

Type II secretion system (T2SS), protein F (T2SSF)

(266-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9JV06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

48.995

100

0.49