Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CNZW441b_RS03015 Genome accession   NZ_CP076657
Coordinates   571286..571939 (+) Length   217 a.a.
NCBI ID   WP_216681546.1    Uniprot ID   -
Organism   Campylobacter novaezeelandiae strain W441b     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 566286..576939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZW441b_RS02995 (CNZW441b_0593) fbaA 567295..568359 (-) 1065 WP_131163540.1 class II fructose-bisphosphate aldolase -
  CNZW441b_RS03000 (CNZW441b_0594) - 568359..569180 (-) 822 WP_131163539.1 peptidylprolyl isomerase -
  CNZW441b_RS03005 (CNZW441b_0595) nth 569262..569885 (+) 624 WP_131163538.1 endonuclease III -
  CNZW441b_RS03010 (CNZW441b_0596) gltS 569882..571102 (-) 1221 WP_131163537.1 sodium/glutamate symporter -
  CNZW441b_RS03015 (CNZW441b_0597) CJE0566 571286..571939 (+) 654 WP_216681546.1 DNA/RNA non-specific endonuclease Regulator
  CNZW441b_RS03020 (CNZW441b_0598) - 571951..572589 (+) 639 WP_131163535.1 trimeric intracellular cation channel family protein -
  CNZW441b_RS03025 (CNZW441b_0599) - 572595..572795 (+) 201 WP_131163534.1 EexN family lipoprotein -
  CNZW441b_RS03030 (CNZW441b_0600) - 572798..574492 (-) 1695 WP_216681547.1 protein-disulfide reductase DsbD -
  CNZW441b_RS03070 (CNZW441b_0608) - 575215..575763 (+) 549 WP_280636232.1 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25683.56 Da        Isoelectric Point: 9.9115

>NTDB_id=577076 CNZW441b_RS03015 WP_216681546.1 571286..571939(+) (CJE0566) [Campylobacter novaezeelandiae strain W441b]
MKKSIIILFCIFGLTFANDRYIPSKEFKKYFNNEDCSLVLDKFYYLNCYDYGYKGTKAVAYRVEASNLKAVQLKNRPYFE
EDTNIPKKYRTYWQDYKKSGYTRGHTAPNASFRFSVAAQKSVFLMSNITPQNAQINNKVWNKIEKRERQLALKNGSIEVL
NLVIYQDNPKFIRNNIAIPSHYIKILKTNSYKECYQIPNQNVEDEKIKNYKIDCKIF

Nucleotide


Download         Length: 654 bp        

>NTDB_id=577076 CNZW441b_RS03015 WP_216681546.1 571286..571939(+) (CJE0566) [Campylobacter novaezeelandiae strain W441b]
ATGAAAAAGAGTATTATCATTTTGTTTTGTATTTTTGGCTTAACTTTTGCTAATGATCGTTATATCCCTAGTAAAGAATT
TAAGAAATATTTTAACAATGAAGATTGTTCTTTGGTCTTGGATAAATTTTATTATTTAAATTGTTATGATTATGGTTATA
AGGGAACAAAAGCAGTGGCTTATAGAGTAGAAGCTAGTAATTTAAAAGCTGTTCAATTAAAAAATAGACCATACTTTGAA
GAAGATACAAATATACCAAAAAAATATAGAACTTATTGGCAAGATTATAAAAAGAGTGGTTATACAAGGGGCCATACTGC
TCCAAATGCTTCATTTCGTTTTAGTGTGGCTGCGCAAAAATCAGTTTTTTTAATGAGTAATATTACTCCACAAAATGCAC
AAATTAACAATAAAGTTTGGAATAAAATTGAAAAAAGAGAAAGACAGCTCGCTTTAAAAAATGGAAGTATCGAGGTTTTA
AATTTAGTAATTTATCAAGATAATCCAAAATTTATTAGAAATAATATTGCTATTCCTAGTCATTATATTAAAATTTTAAA
GACAAATAGCTATAAAGAATGCTATCAAATCCCAAATCAAAATGTAGAAGACGAGAAAATTAAAAATTATAAGATTGATT
GTAAAATATTTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.256

89.862

0.631
  CJE1441 Campylobacter jejuni RM1221

67.677

91.244

0.618