Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG49_RS01695 Genome accession   NZ_CP094173
Coordinates   331125..332174 (-) Length   349 a.a.
NCBI ID   WP_245052619.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0001     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 326125..337174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG49_RS01675 (MPG49_01675) rpsL 327046..327453 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG49_RS01680 (MPG49_01680) rpsG 327469..327936 (+) 468 WP_245052617.1 30S ribosomal protein S7 -
  MPG49_RS01685 (MPG49_01685) fusA 327948..330026 (+) 2079 WP_000101843.1 elongation factor G -
  MPG49_RS01690 (MPG49_01690) - 330772..330936 (+) 165 WP_000744175.1 hypothetical protein -
  MPG49_RS01695 (MPG49_01695) waaF 331125..332174 (-) 1050 WP_245052619.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG49_RS01700 (MPG49_01700) hisS 332236..333564 (+) 1329 WP_245052621.1 histidine--tRNA ligase -
  MPG49_RS01705 (MPG49_01705) asd 333551..334591 (+) 1041 WP_245052623.1 aspartate-semialdehyde dehydrogenase -
  MPG49_RS01710 (MPG49_01710) - 335017..336126 (+) 1110 WP_245052625.1 DUF874 family protein -
  MPG49_RS01715 (MPG49_01715) - 336357..337100 (-) 744 WP_002203616.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39637.56 Da        Isoelectric Point: 9.7445

>NTDB_id=577016 MPG49_RS01695 WP_245052619.1 331125..332174(-) (waaF) [Helicobacter pylori strain Hpfe0001]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGSQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNIPKKIGFNPSASYGSAKRWSASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCAKTSIEELIQRIAILDLFITNDSGPMHVAASVQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=577016 MPG49_RS01695 WP_245052619.1 331125..332174(-) (waaF) [Helicobacter pylori strain Hpfe0001]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCTCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGTCATGCGGTAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACATCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGTCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGTGCGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTGTTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.235

97.421

0.372