Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG23_RS02800 Genome accession   NZ_CP094172
Coordinates   590837..591388 (+) Length   183 a.a.
NCBI ID   WP_245089361.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 585837..596388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG23_RS02785 (MPG23_02785) cysS 586017..587414 (-) 1398 WP_245089339.1 cysteine--tRNA ligase -
  MPG23_RS02790 (MPG23_02790) murJ 587415..588875 (-) 1461 WP_245089341.1 murein biosynthesis integral membrane protein MurJ -
  MPG23_RS02795 (MPG23_02795) - 588968..590812 (+) 1845 WP_245089343.1 FapA family protein -
  MPG23_RS02800 (MPG23_02800) ruvA 590837..591388 (+) 552 WP_245089361.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG23_RS02805 (MPG23_02805) - 591531..594311 (+) 2781 WP_245089363.1 DUF3519 domain-containing protein -
  MPG23_RS02810 (MPG23_02810) - 594414..594809 (+) 396 WP_245089365.1 hypothetical protein -
  MPG23_RS02815 (MPG23_02815) - 594811..595947 (-) 1137 WP_154437110.1 NAD-binding protein -
  MPG23_RS02820 (MPG23_02820) rpmB 596097..596285 (-) 189 WP_096528105.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20164.79 Da        Isoelectric Point: 9.4311

>NTDB_id=576973 MPG23_RS02800 WP_245089361.1 590837..591388(+) (ruvA) [Helicobacter pylori strain Hpfe0002]
MIVGLMGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETGPVRNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=576973 MPG23_RS02800 WP_245089361.1 590837..591388(+) (ruvA) [Helicobacter pylori strain Hpfe0002]
ATGATAGTGGGTTTGATGGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCGCATCTTTTATATGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTGGTCCTGTGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGTTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361