Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KP808_RS03635 Genome accession   NZ_CP076652
Coordinates   839366..840958 (-) Length   530 a.a.
NCBI ID   WP_230017462.1    Uniprot ID   -
Organism   Pseudomonas savastanoi strain MHT1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 834366..845958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP808_RS03620 (KP808_03590) - 835877..836986 (-) 1110 WP_058408735.1 efflux RND transporter periplasmic adaptor subunit -
  KP808_RS03625 (KP808_03595) - 837068..837685 (-) 618 WP_058408762.1 TetR/AcrR family transcriptional regulator -
  KP808_RS03630 (KP808_03600) pilR 838026..839363 (-) 1338 WP_230017461.1 sigma-54 dependent transcriptional regulator Regulator
  KP808_RS03635 (KP808_03605) pilS 839366..840958 (-) 1593 WP_230017462.1 nitrogen regulation protein NR(II) Regulator
  KP808_RS03640 (KP808_03610) - 840948..841187 (-) 240 WP_002551997.1 PP0621 family protein -
  KP808_RS03645 (KP808_03615) - 841317..842339 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  KP808_RS03650 (KP808_03620) rluD 842489..843451 (+) 963 WP_230017463.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KP808_RS03655 (KP808_03625) pgeF 843448..844176 (+) 729 WP_230017464.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 57944.72 Da        Isoelectric Point: 6.8228

>NTDB_id=576956 KP808_RS03635 WP_230017462.1 839366..840958(-) (pilS) [Pseudomonas savastanoi strain MHT1]
MTADTPSLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
SLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEELNALILQRMRTGILVLDANRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLVNPIMVPRSVTTSPIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQSGRIDRVIENVLQLSRRRESQPELLDLKTWLENFVAELRSAATAG
QSVHVEISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDQQSDLPILEVQDDGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=576956 KP808_RS03635 WP_230017462.1 839366..840958(-) (pilS) [Pseudomonas savastanoi strain MHT1]
GTGACCGCTGACACGCCCTCGCTTGCCAGCCCACAGGCGCAACGGATCCTGCGGCTTTACCACCTTTATCGACTGACCAT
CGGCGTCGTACTGGTCCTGCTGATTTCCAGCAGCCTGGAAACCGAACTGTTGCAACTGGCCAATCCGAACCTGTTCCGTT
CGGGTTGCTGGCTGTATCTAGTGTTCAATATTCTGGTCGTCGTGCTGCTGGAGCGTCCCAGCCGTCAGGCGCAGCTGTTC
AGTCTGGCAATGACTGACGCAATCATGCTCTCTGCGCTGTTCTACGCGGCGGGTGGCCCTTCCAGCGGCATAGGCAATCT
GTTGATTGCTTCCGTAGCAATCAGCAATGTATTGCTGCGGGGCCGTATCGGTTTGCTGATCGCCGCCGTTTCTGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGTACACCGTCGGTTTCCAACGACTACGTGCAGGCCGGCTCTCTGGGT
GCCCTGTGCTTCGCCGCCGCACTGCTGGTGCAAGCGCTGACAGCGCGCATGCAGGTCAGCGAAGTGCTGGCCGAACAGCG
TGCAGCGGATGTCGACAGCCTTGAAGAACTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCGTCAGGTGCTGCTGGCCAATCAAGGTGCCCTTACCCTACTGGGCCACGAGCGACTGGTCGGCCAGGTTATCGAC
GCTTACTCGCCGCAGTTGGTGGAACGCCTGCGTCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCGTCACGACTTC
ACCCATCGGGCCGGTGCTGCAACCGAGCTTTGCCGCACTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTTGAAG
ACCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTCGCCGCGCTGGGACGCTTGACCGCCGGGATTGCCCACGAG
ATACGCAACCCGCTGGGCGCAGTCAGCCATGCCGCACAGTTACTCAACGAATCTGAAGAACTCAGTGCAGCGGACCGACG
CCTGGGACAGATCATTCATGACCAGTCGGGACGTATTGATCGGGTCATCGAAAATGTTCTGCAACTGTCACGCCGGCGTG
AGTCGCAACCCGAATTGCTGGACCTGAAAACCTGGCTGGAAAACTTTGTTGCCGAGCTTCGCAGTGCCGCCACTGCCGGA
CAGTCGGTTCATGTTGAAATCAGCCCCGGAACGCTGACAACCCGCATGGATTCCGGGCAACTGACCCAGATCATGACCAA
CCTGCTACAGAACGGCCTGCGCTACAGCGGCAGAAATCATTCGTCAGCGCAGGTCTGGCTGAAGCTGCATCATGACCAAC
AAAGCGACTTGCCGATTCTTGAAGTGCAGGACGACGGGCCGGGGGTCAGCGAGCAACATTTGGCCAAGCTGTTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACCGGTCTTGGTCTATATCTGTCACGCGAGCTGTGCGAAAGCAATCAGGCGCACCT
GGAATACGTCCCGCGGCAAGGTGGCGGCAGTTGTCTGCGCATAACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.394

100

0.615