Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | G655_RS23375 | Genome accession | NC_020912 |
| Coordinates | 5115223..5116095 (+) | Length | 290 a.a. |
| NCBI ID | WP_015503555.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa B136-33 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5110223..5121095
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G655_RS23350 (G655_23255) | nadC | 5110594..5111442 (+) | 849 | WP_003104915.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| G655_RS23360 (G655_23260) | - | 5111595..5112068 (-) | 474 | WP_015503553.1 | pilin | - |
| G655_RS23365 (G655_23265) | pilB | 5112299..5113999 (+) | 1701 | WP_015503554.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| G655_RS23370 (G655_23270) | pilC | 5114003..5115220 (+) | 1218 | WP_010792214.1 | type II secretion system F family protein | Machinery gene |
| G655_RS23375 (G655_23275) | pilD | 5115223..5116095 (+) | 873 | WP_015503555.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| G655_RS23380 (G655_23280) | coaE | 5116092..5116703 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| G655_RS23385 (G655_23285) | yacG | 5116700..5116900 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| G655_RS23390 (G655_23290) | - | 5116937..5117146 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| G655_RS23395 (G655_23295) | - | 5117252..5117941 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| G655_RS23400 (G655_23300) | - | 5117938..5118408 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| G655_RS23405 (G655_23305) | - | 5118405..5118830 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| G655_RS23410 (G655_23310) | - | 5118963..5119592 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| G655_RS23415 (G655_23315) | - | 5119589..5120038 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| G655_RS23420 (G655_23320) | - | 5120064..5120234 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31804.80 Da Isoelectric Point: 7.3862
>NTDB_id=57690 G655_RS23375 WP_015503555.1 5115223..5116095(+) (pilD) [Pseudomonas aeruginosa B136-33]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGVTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWHILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGVTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWHILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=57690 G655_RS23375 WP_015503555.1 5115223..5116095(+) (pilD) [Pseudomonas aeruginosa B136-33]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCGTCACCTGGCAGGCAGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCATATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCGTCACCTGGCAGGCAGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCATATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.325 |
99.655 |
0.541 |
| pilD | Vibrio campbellii strain DS40M4 |
52.797 |
98.621 |
0.521 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |