Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KNV97_RS21220 Genome accession   NZ_CP076643
Coordinates   3264452..3265066 (-) Length   204 a.a.
NCBI ID   WP_136486116.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3259452..3270066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS21210 (KNV97_21210) aceF 3260701..3262593 (+) 1893 WP_218562712.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  KNV97_RS21215 (KNV97_21215) lpdA 3262851..3264278 (+) 1428 WP_136486114.1 dihydrolipoyl dehydrogenase -
  KNV97_RS21220 (KNV97_21220) opaR 3264452..3265066 (-) 615 WP_136486116.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  KNV97_RS21225 (KNV97_21225) hpt 3265501..3266034 (+) 534 WP_136486118.1 hypoxanthine phosphoribosyltransferase -
  KNV97_RS21230 (KNV97_21230) can 3266096..3266764 (-) 669 WP_136486120.1 carbonate dehydratase -
  KNV97_RS21235 (KNV97_21235) - 3267094..3268011 (+) 918 WP_136486122.1 ABC transporter ATP-binding protein -
  KNV97_RS21240 (KNV97_21240) - 3268019..3268789 (+) 771 WP_136486124.1 ABC transporter permease -
  KNV97_RS21245 (KNV97_21245) panC 3268858..3269736 (-) 879 WP_136486126.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23500.78 Da        Isoelectric Point: 5.1107

>NTDB_id=576841 KNV97_RS21220 WP_136486116.1 3264452..3265066(-) (opaR) [Vibrio ostreae strain OG9-811]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFANRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDAHAKENLGNITEQMVKLAIDDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLLKNMFAKAIERGEVCDQHDS
EDLATLFHGVCYSLFVQANRVRDEGQVLKLVQSYLDMLCIYKEQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=576841 KNV97_RS21220 WP_136486116.1 3264452..3265066(-) (opaR) [Vibrio ostreae strain OG9-811]
ATGGACGCATCTATCGAGAAACGCCCCAGAACCAGGCTTTCCCCGCAAAAACGTAAACTGCAATTAATGGAAATTGCACT
GGAGGTTTTTGCTAATCGTGGGATTGGTCGAGGCGGTCACGCCGATATCGCAGAAATCGCTCAGGTTTCTGTCGCTACTG
TGTTTAACTACTTCCCGACTCGCGAAGATTTGGTCGATGACGTGCTCACTTATGTAGTACGCCAGTTTTCCAACTTCCTC
ACTGACAACATCGATCTCGATGCTCACGCTAAAGAAAATCTTGGCAACATCACCGAGCAGATGGTCAAACTGGCAATCGA
TGATTGCCACTGGCTGAAAGTGTGGTTTGAGTGGAGTGCTTCGACCCGTGATGAAGTGTGGCCGCTGTTTGTCTCCAGCA
ACCGCACCAACCAGCTGCTGCTGAAAAACATGTTTGCCAAGGCGATTGAGCGTGGTGAAGTGTGTGACCAGCATGACTCT
GAAGATCTGGCCACCCTGTTTCATGGTGTTTGCTACTCACTGTTCGTACAGGCAAATCGTGTGCGTGATGAAGGTCAGGT
GCTTAAGCTGGTGCAAAGCTATCTCGACATGCTGTGTATCTACAAAGAGCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.597

98.529

0.794
  hapR Vibrio cholerae C6706

77.723

99.02

0.77
  hapR Vibrio cholerae strain A1552

77.723

99.02

0.77