Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   KNV97_RS01740 Genome accession   NZ_CP076642
Coordinates   384520..386571 (-) Length   683 a.a.
NCBI ID   WP_218561957.1    Uniprot ID   A0A975U6W4
Organism   Vibrio ostreae strain OG9-811     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 379520..391571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS01725 (KNV97_01725) clcA 380286..381719 (+) 1434 WP_136485665.1 H(+)/Cl(-) exchange transporter ClcA -
  KNV97_RS01730 (KNV97_01730) - 381955..382938 (+) 984 WP_136485663.1 TDT family transporter -
  KNV97_RS01735 (KNV97_01735) cqsA 383169..384350 (+) 1182 WP_218562110.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  KNV97_RS01740 (KNV97_01740) cqsS 384520..386571 (-) 2052 WP_218561957.1 response regulator Regulator
  KNV97_RS01745 (KNV97_01745) - 386877..389916 (-) 3040 Protein_352 AAA family ATPase -
  KNV97_RS01750 (KNV97_01750) - 389920..391062 (-) 1143 WP_136485657.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78700.76 Da        Isoelectric Point: 5.7017

>NTDB_id=576806 KNV97_RS01740 WP_218561957.1 384520..386571(-) (cqsS) [Vibrio ostreae strain OG9-811]
MDVVKKIYQYAEPNLTLVGWMGLVGFPVYYYIWAFLFPQPYENIWLRLFCSCLFAGIAFRNSLPKLMQRYMPCYYLLSIS
FCLPFFFAYMLLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQALLSVLAAYLVTYWVRDESLTDWILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRTILPAQSTDQRLGAHIDGQDLSLLYEILKNADD
VIHSGNETIDLLLTSIDENRVSTSTFKKQRAELVVSHALKSFSYKRSLDRQAVSLSVEADFDFFGSDTLLKFALYNLLKN
AFYYQNGEQFAIDVTLTRDAQHNMIKVRDNGVGIAPDRLEEIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNISCESVLG
EWTEFILSFPAYHSEVVGHIKLDLMKTKTVLYVGDDGLLSRHLSEQSFYQGFRLHLLTLAEALQREEYELEYDLILIDLE
QVNGQWQSMVELETKLHATEAKIAYLYDKQNRYPINIERHLKVFPLEIRQLLMDTNQQLDHLFFEAEPLLPDHNVVPLKK
TRCERRILVVDDNQSLRTFTALLLEKQGYEVIQANDGQQALDEMEHNTFDLVLMDIEMPVIDGLAATKAIRESDKPYRHV
PIVGHTGDNSPLTIEKIQQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=576806 KNV97_RS01740 WP_218561957.1 384520..386571(-) (cqsS) [Vibrio ostreae strain OG9-811]
ATGGACGTAGTTAAGAAAATATACCAGTATGCTGAGCCAAACCTGACTCTGGTCGGTTGGATGGGGCTTGTCGGCTTTCC
GGTGTACTACTACATCTGGGCGTTTTTATTCCCGCAGCCATATGAAAACATCTGGCTGCGGTTGTTCTGTTCCTGTCTGT
TTGCCGGTATCGCATTTCGCAACAGTTTGCCCAAACTGATGCAGCGTTATATGCCTTGTTATTATCTGCTCAGCATCAGC
TTCTGCTTACCGTTTTTCTTTGCTTACATGTTGCTGATGAACGATTGGTCGACGGTGTGGGCGATGTCGTTTATGGCGTC
TATTTTTCTGCATATCCTGCTGGTGCATGAGACCAAGGTGATGCTGCTGCAGGCGTTGTTGTCTGTCCTCGCAGCCTACC
TGGTGACGTATTGGGTACGCGATGAGTCTTTGACAGACTGGATCTTATGGCCTTACGTACCGATTTTTCTGTTTACCTAT
GTGTTTGGTAACCTGTTCTACTTCCGCAATCAGAGTTCGCATGAGTCCAAAGTGTCGATAGCGAAGTCATTTGGCGCGGG
GATCGCGCACGAGATGCGTAATCCGTTGAGCGCCTTAAAGTCTTCTGTGGACGTTTTGCGTACCATCTTGCCGGCGCAGT
CCACTGACCAACGGCTGGGCGCTCATATTGATGGTCAGGATCTGAGTCTGTTGTACGAGATTCTTAAAAATGCCGACGAT
GTGATTCATTCGGGTAATGAGACTATTGATTTACTGCTGACATCTATTGATGAGAACCGAGTTTCAACGTCGACGTTTAA
AAAGCAGCGCGCAGAGCTAGTGGTCAGCCATGCACTCAAATCGTTTTCGTACAAGCGATCGCTGGATCGTCAGGCGGTGA
GCCTGAGCGTTGAGGCAGATTTTGATTTTTTTGGTAGCGATACGTTATTAAAATTCGCGTTATATAACTTACTCAAAAAT
GCGTTTTATTATCAGAATGGCGAACAGTTTGCGATTGATGTGACCCTGACCCGTGATGCGCAACACAACATGATCAAGGT
GCGTGACAACGGAGTGGGTATTGCTCCGGACAGGCTGGAAGAAATTTTTAAAGACTTCTATACCTTTGGCAAAAATGGCA
GCTATGGTCTCGGATTACCGTTTTGCCGCAAGGTCATGAAATCGTTTGGCGGTAATATCAGCTGTGAATCTGTGTTGGGC
GAGTGGACGGAATTTATCCTCAGTTTTCCTGCCTATCACTCTGAAGTCGTCGGTCATATTAAGCTGGACCTGATGAAAAC
TAAAACGGTGCTCTACGTAGGCGATGACGGTTTGCTCAGCCGTCATTTAAGTGAACAGTCTTTTTATCAGGGCTTTCGTC
TGCATTTATTGACCCTGGCGGAAGCGTTACAACGTGAAGAGTATGAGCTGGAATATGATCTGATTCTGATCGATCTGGAA
CAGGTCAACGGTCAGTGGCAGTCGATGGTGGAGTTGGAAACTAAGTTACACGCGACTGAAGCCAAAATCGCCTATCTGTA
CGACAAGCAGAATCGTTATCCAATCAACATAGAACGTCATCTCAAAGTCTTTCCGCTTGAGATACGCCAACTGTTGATGG
ATACCAATCAGCAGCTTGATCATCTGTTTTTTGAAGCGGAACCGCTGTTGCCGGATCACAATGTGGTGCCGCTGAAAAAA
ACCAGATGTGAACGTCGTATTCTGGTGGTGGACGATAATCAGTCGCTGCGTACTTTCACCGCCTTGCTGCTGGAAAAGCA
GGGCTATGAAGTGATTCAGGCCAATGACGGCCAGCAGGCGCTGGATGAGATGGAACACAATACTTTCGACTTGGTGTTGA
TGGATATCGAGATGCCGGTTATTGATGGCCTCGCCGCGACCAAAGCGATTCGTGAATCTGATAAACCGTACCGTCATGTG
CCGATTGTGGGTCACACCGGTGATAACAGCCCGCTGACGATTGAAAAGATTCAGCAATCCGGTATGAACGATTACATTGT
TAAACCGGCTGATAAAGATAAGCTATTGGGTAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(310-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

58.858

100

0.589