Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   KNV97_RS01735 Genome accession   NZ_CP076642
Coordinates   383169..384350 (+) Length   393 a.a.
NCBI ID   WP_218562110.1    Uniprot ID   A0A975U7A2
Organism   Vibrio ostreae strain OG9-811     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 378169..389350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS01720 (KNV97_01720) - 378604..379590 (-) 987 WP_136485667.1 GTP-binding protein -
  KNV97_RS01725 (KNV97_01725) clcA 380286..381719 (+) 1434 WP_136485665.1 H(+)/Cl(-) exchange transporter ClcA -
  KNV97_RS01730 (KNV97_01730) - 381955..382938 (+) 984 WP_136485663.1 TDT family transporter -
  KNV97_RS01735 (KNV97_01735) cqsA 383169..384350 (+) 1182 WP_218562110.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  KNV97_RS01740 (KNV97_01740) cqsS 384520..386571 (-) 2052 WP_218561957.1 response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43565.44 Da        Isoelectric Point: 6.3061

>NTDB_id=576805 KNV97_RS01735 WP_218562110.1 383169..384350(+) (cqsA) [Vibrio ostreae strain OG9-811]
MNTNAKIHYLPDFIQRRLEFFIEDLIHPNQNGKHLVLGTRPQYGDIVLQSNDYLSLANHPLIKARLKKAIDETQDSVFMS
AIFLQDQASKPSLEQQLADYVHFDSCLLSQSGWNANTALLQTICPPDSHVYIDFFAHMSLWEGARYASANLHPFMHNNCD
HLRKLIQRNGPGLIAVDSVYSTLGTVAPLVDIVAIAQETGCAILVDESHSIGTHGIQGAGLVAELGLSSQVDFMTASLAK
TFAYRAGVIWTNNCANQCIPFVGYPAIFSSTILPYEIAALEATLDVIKSADKKREQLFNNARMLNQALNNIGITTRSQSQ
IIALETGDERNTEKARDYLEQNGIFGAVFCRPATAKNRNIIRLSVTSSVTEQQIDKIVSVCHQAQQSGDVYFY

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=576805 KNV97_RS01735 WP_218562110.1 383169..384350(+) (cqsA) [Vibrio ostreae strain OG9-811]
ATGAACACCAATGCCAAAATCCATTACCTGCCTGATTTTATTCAGCGTCGGTTAGAGTTCTTTATTGAAGATTTAATTCA
TCCCAACCAGAACGGTAAACATCTGGTATTGGGAACAAGGCCGCAATACGGAGATATTGTATTGCAAAGCAATGATTATC
TCAGCCTGGCTAACCACCCTCTGATTAAAGCACGGCTGAAAAAGGCTATCGATGAGACACAGGACAGTGTTTTTATGTCA
GCCATTTTCCTCCAGGACCAGGCGTCCAAACCCAGTCTTGAACAACAGTTGGCAGATTATGTCCATTTTGATTCATGTCT
GTTGTCGCAGTCCGGCTGGAACGCCAACACAGCGCTATTGCAAACTATTTGTCCACCAGACAGCCACGTTTACATCGATT
TTTTTGCTCATATGTCACTGTGGGAAGGTGCTCGTTACGCCAGTGCGAACCTACATCCGTTTATGCATAATAACTGCGAT
CATCTGCGCAAGCTGATACAGCGCAACGGGCCAGGGCTGATCGCAGTCGACTCCGTCTACAGCACCCTCGGCACTGTTGC
GCCTTTGGTGGATATCGTAGCCATTGCGCAGGAAACCGGGTGCGCCATTCTGGTCGACGAATCGCATTCCATCGGCACAC
ACGGTATTCAGGGAGCGGGATTAGTTGCCGAGCTTGGCCTTTCTTCCCAGGTCGATTTTATGACTGCCAGCCTGGCAAAA
ACGTTCGCATACCGTGCCGGGGTTATCTGGACCAACAATTGCGCGAACCAGTGTATTCCTTTTGTCGGTTATCCGGCCAT
ATTCAGTTCGACCATTCTGCCGTATGAAATCGCGGCGCTTGAGGCTACATTGGACGTGATAAAAAGTGCCGACAAAAAGC
GTGAGCAATTATTTAATAATGCCCGCATGCTAAACCAGGCGCTGAATAATATCGGGATAACGACACGCAGCCAGTCACAA
ATTATTGCGCTGGAAACCGGAGATGAACGTAATACGGAGAAAGCGCGTGACTATCTGGAGCAAAATGGCATCTTTGGCGC
GGTATTTTGCCGGCCGGCAACGGCCAAAAACAGAAACATTATCCGTTTGTCGGTCACCAGTTCGGTCACCGAGCAGCAAA
TCGATAAAATCGTGTCTGTCTGCCATCAGGCGCAACAAAGCGGGGATGTTTATTTCTATTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

67.102

97.455

0.654