Detailed information NTG0576770

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG18_RS00715
• Genome accession: NZ_CP094165
• Coordinates: 149470..150525 (+)
• Length: 351 a.a.
• NCBI ID: WP_245078674.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0011
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144470..155525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG18_RS00685 (MPG18_00685)	-	144894..145307 (+)	414	WP_001023005.1	universal stress protein	-
MPG18_RS00690 (MPG18_00690)	-	145328..145603 (+)	276	WP_075668094.1	ATP-dependent Clp protease adaptor ClpS	-
MPG18_RS00695 (MPG18_00695)	-	145603..147825 (+)	2223	WP_245078117.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG18_RS00700 (MPG18_00700)	panD	147815..148165 (+)	351	WP_245078119.1	aspartate 1-decarboxylase	-
MPG18_RS00705 (MPG18_00705)	-	148176..148469 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG18_RS00710 (MPG18_00710)	-	148469..149464 (+)	996	WP_245078672.1	PDZ domain-containing protein	-
MPG18_RS00715 (MPG18_00715)	comB6	149470..150525 (+)	1056	WP_245078674.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG18_RS00720 (MPG18_00720)	comB7	150541..150654 (+)	114	WP_073422943.1	comB7 lipoprotein	Machinery gene
MPG18_RS00725 (MPG18_00725)	comB8	150651..151394 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
MPG18_RS00730 (MPG18_00730)	comB9	151394..152356 (+)	963	WP_245078121.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG18_RS00735 (MPG18_00735)	comB10	152349..153485 (+)	1137	WP_245078122.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG18_RS00740 (MPG18_00740)	-	153555..154958 (+)	1404	WP_245078124.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39811.71 Da
• Isoelectric Point: 8.8165

>NTDB_id=576770 MPG18_RS00715 WP_245078674.1 149470..150525(+) (comB6) [Helicobacter pylori strain Hpfe0011]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFAFFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=576770 MPG18_RS00715 WP_245078674.1 149470..150525(+) (comB6) [Helicobacter pylori strain Hpfe0011]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGTGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTAGGGTTTTTTGCGTTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAATCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGAGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGTGTTGTAGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGCTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterProScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972