Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LEUCM_RS05915 Genome accession   NZ_AP017929
Coordinates   1176378..1176992 (-) Length   204 a.a.
NCBI ID   WP_011374972.1    Uniprot ID   Q38W54
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1171378..1181992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS05890 (LACBS_01157) - 1171458..1171784 (-) 327 WP_016265359.1 heavy metal-binding domain-containing protein -
  LEUCM_RS05895 (LACBS_01158) - 1171801..1172166 (-) 366 WP_025016401.1 DUF1304 domain-containing protein -
  LEUCM_RS05900 (LACBS_01159) galE 1172252..1173244 (-) 993 WP_011374975.1 UDP-glucose 4-epimerase GalE -
  LEUCM_RS05905 (LACBS_01160) recJ 1173389..1175701 (+) 2313 WP_025016402.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LEUCM_RS05910 (LACBS_01161) - 1175725..1176243 (+) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  LEUCM_RS05915 (LACBS_01162) dinR/lexA 1176378..1176992 (-) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  LEUCM_RS05920 (LACBS_01163) - 1177127..1177369 (+) 243 WP_025016405.1 DUF896 domain-containing protein -
  LEUCM_RS05925 (LACBS_01164) - 1177450..1177680 (+) 231 WP_011374970.1 YneF family protein -
  LEUCM_RS05930 (LACBS_01165) - 1177822..1179567 (+) 1746 WP_025016406.1 ABC transporter ATP-binding protein -
  LEUCM_RS05935 (LACBS_01166) - 1179569..1181359 (+) 1791 WP_025016407.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.96 Da        Isoelectric Point: 4.9705

>NTDB_id=57677 LEUCM_RS05915 WP_011374972.1 1176378..1176992(-) (dinR/lexA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTPAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=57677 LEUCM_RS05915 WP_011374972.1 1176378..1176992(-) (dinR/lexA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTACCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAGCCACGGGCGATCGAGTTAACGCCCGCTGGCCTAACGGCAATTGGGGCGACACCC
CAGAAAATCCCAGTATTAGGGGTGGTTACTGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACCGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAACGCCGGTATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGGAAGGTCGTTGGCCTTTACCGGGATCGCATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(3-65)

Peptidase S24-like (Peptidase_S24)

(84-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593

Multiple sequence alignment