Detailed information NTG0057656

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LEUCM_RS02755
• Genome accession: NZ_AP017929
• Coordinates: 554673..555800 (-)
• Length: 375 a.a.
• NCBI ID: WP_016264313.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 549673..560800

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LEUCM_RS02745 (LACBS_00541)	gyrA	550039..552612 (-)	2574	WP_016264314.1	DNA gyrase subunit A	-
LEUCM_RS02750 (LACBS_00542)	gyrB	552660..554636 (-)	1977	WP_373879104.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
LEUCM_RS02755 (LACBS_00543)	recF	554673..555800 (-)	1128	WP_016264313.1	DNA replication/repair protein RecF	Machinery gene
LEUCM_RS02760 (LACBS_00544)	yaaA	555807..556034 (-)	228	WP_016264312.1	S4 domain-containing protein YaaA	-
LEUCM_RS02765 (LACBS_00545)	dnaN	556277..557416 (-)	1140	WP_016264311.1	DNA polymerase III subunit beta	-
LEUCM_RS02770 (LACBS_00546)	dnaA	557594..558940 (-)	1347	WP_011373719.1	chromosomal replication initiator protein DnaA	-
LEUCM_RS02775 (LACBS_00547)	rpmH	559511..559651 (+)	141	WP_004265830.1	50S ribosomal protein L34	-
LEUCM_RS02780 (LACBS_00548)	rnpA	559717..560079 (+)	363	WP_011375565.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 43222.06 Da
• Isoelectric Point: 6.5993

>NTDB_id=57656 LEUCM_RS02755 WP_016264313.1 554673..555800(-) (recF) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MYLSELQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDRELIQWHEDFAKITGLVQRSAGK
TPLELVLSQKGKKAKVNHLEQAKLSQYIGQLNVVLFAPEDLNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQR
NQYLKQLQRRQAKDLVYLGVLSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLDQSVEE
LYQQFQTLYEKQQTREVEQGTTLIGPHRDDVQFLVNDKDVQAFGSQGQQRTTALSVKLAEIDLMKAQTGEYPILLLDDVL
SELDDLRQTHLLKTFQNKVQTFLTTTSLENVKKEIIATPRVFTVTNGVVTEEQAE

Nucleotide

• Length: 1128 bp

>NTDB_id=57656 LEUCM_RS02755 WP_016264313.1 554673..555800(-) (recF) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGTATCTAAGCGAACTACAACTGAATCATTATCGTAATTATGAGTCAGTTGATGTGCACTTTTCACCAGATACGAACGT
CTTGATTGGTGAAAATGCGCAGGGGAAAACGAACTTACTAGAAGCAATCTACGTTTTAGCCTTGGCCCGCTCACATCGCA
CGAATACCGATCGCGAATTAATTCAATGGCATGAAGACTTCGCTAAAATTACCGGTTTGGTCCAACGTTCTGCAGGGAAA
ACCCCGTTAGAGCTCGTTTTAAGCCAAAAAGGTAAAAAGGCGAAGGTCAATCATTTAGAACAGGCCAAGTTATCACAATA
TATTGGTCAGCTAAACGTCGTGTTATTTGCGCCGGAGGATTTAAACATCGTTAAGGGTTCGCCCGCTGTGAGACGTCATT
TCATTGATATGGAATTCGGGCAGATGAGTAGCAAGTATCTCTATAATATTTCGCAATACAAATCAATTCTGAAACAACGT
AATCAATATCTTAAGCAACTCCAACGGCGCCAAGCCAAGGATCTTGTTTATTTAGGTGTTTTATCGGATCAATTAGCGGC
TTACGGGGCGGAAGTGACCGTCGCCCGTCGCCAGTTTCTCCAACAAATGGAAAAATGGGCCCAAAAATTGCATCAGGAGA
TTACGAAGGATCGGGAAGTCTTGACGTTTAAATATCAAAGTCAAATTCCAGAAGAACAATTAGATCAAAGTGTCGAAGAA
CTCTATCAACAATTTCAAACCTTGTATGAGAAACAACAAACCCGTGAGGTTGAACAAGGCACGACGTTGATTGGTCCCCA
CCGCGATGATGTTCAATTTTTAGTCAACGATAAGGATGTGCAGGCCTTTGGTTCCCAAGGGCAACAACGGACAACCGCGT
TGAGTGTCAAATTGGCCGAAATTGACTTGATGAAGGCCCAAACCGGGGAATACCCGATTTTATTACTGGACGATGTGTTG
TCGGAATTAGACGATTTACGCCAAACACATTTGTTGAAGACGTTCCAAAACAAAGTCCAAACATTCCTCACAACAACCAG
TTTAGAGAATGTTAAAAAAGAAATTATTGCGACGCCGCGCGTGTTTACAGTCACCAACGGGGTCGTCACAGAAGAACAAG
CAGAATAG

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	56.183	99.2	0.557
recF	Streptococcus pneumoniae R6	48.509	98.4	0.477