Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG81_RS06640 Genome accession   NZ_CP094151
Coordinates   1388669..1388935 (-) Length   88 a.a.
NCBI ID   WP_245086843.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383669..1393935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS06605 (MPG81_06605) - 1384472..1384659 (+) 188 Protein_1293 DUF1104 domain-containing protein -
  MPG81_RS08000 - 1384622..1386253 (-) 1632 Protein_1294 type IA DNA topoisomerase -
  MPG81_RS06620 (MPG81_06620) comB4 1386256..1386789 (-) 534 WP_342370445.1 TraM recognition domain-containing protein Machinery gene
  MPG81_RS06625 (MPG81_06625) - 1387029..1387193 (-) 165 WP_245086839.1 hypothetical protein -
  MPG81_RS06630 (MPG81_06630) comB4 1387193..1387804 (-) 612 WP_342370456.1 DUF87 domain-containing protein Machinery gene
  MPG81_RS06635 (MPG81_06635) - 1387711..1388622 (-) 912 WP_245086841.1 hypothetical protein -
  MPG81_RS06640 (MPG81_06640) comB3 1388669..1388935 (-) 267 WP_245086843.1 virB3 type IV secretion protein Machinery gene
  MPG81_RS06645 (MPG81_06645) - 1388936..1389240 (-) 305 Protein_1300 virB2 type IV secretion protein -
  MPG81_RS06650 (MPG81_06650) - 1389237..1390760 (-) 1524 Protein_1301 hypothetical protein -
  MPG81_RS06660 (MPG81_06660) - 1390767..1391060 (-) 294 WP_245086849.1 hypothetical protein -
  MPG81_RS06665 (MPG81_06665) - 1391080..1391851 (-) 772 Protein_1303 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10114.92 Da        Isoelectric Point: 4.8782

>NTDB_id=576469 MPG81_RS06640 WP_245086843.1 1388669..1388935(-) (comB3) [Helicobacter pylori strain Hpfe019]
MALHIVCVESINIREISKRETFLGLNLDSWIVGFLMSAWLLSFQPLYAIGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=576469 MPG81_RS06640 WP_245086843.1 1388669..1388935(-) (comB3) [Helicobacter pylori strain Hpfe019]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTGGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATTGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTATATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386