Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB4   Type   Machinery gene
Locus tag   MPG81_RS06630 Genome accession   NZ_CP094151
Coordinates   1387193..1387804 (-) Length   203 a.a.
NCBI ID   WP_342370456.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382193..1392804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS06590 (MPG81_06590) rpmI 1382415..1382609 (+) 195 WP_001125542.1 50S ribosomal protein L35 -
  MPG81_RS06595 (MPG81_06595) rplT 1382704..1383054 (+) 351 WP_001264172.1 50S ribosomal protein L20 -
  MPG81_RS06600 (MPG81_06600) - 1383255..1384115 (+) 861 WP_000750190.1 outer membrane protein -
  MPG81_RS06605 (MPG81_06605) - 1384472..1384659 (+) 188 Protein_1293 DUF1104 domain-containing protein -
  MPG81_RS08000 - 1384622..1386253 (-) 1632 Protein_1294 type IA DNA topoisomerase -
  MPG81_RS06620 (MPG81_06620) comB4 1386256..1386789 (-) 534 WP_342370445.1 TraM recognition domain-containing protein Machinery gene
  MPG81_RS06625 (MPG81_06625) - 1387029..1387193 (-) 165 WP_245086839.1 hypothetical protein -
  MPG81_RS06630 (MPG81_06630) comB4 1387193..1387804 (-) 612 WP_342370456.1 DUF87 domain-containing protein Machinery gene
  MPG81_RS06635 (MPG81_06635) - 1387711..1388622 (-) 912 WP_245086841.1 hypothetical protein -
  MPG81_RS06640 (MPG81_06640) comB3 1388669..1388935 (-) 267 WP_245086843.1 virB3 type IV secretion protein Machinery gene
  MPG81_RS06645 (MPG81_06645) - 1388936..1389240 (-) 305 Protein_1300 virB2 type IV secretion protein -
  MPG81_RS06650 (MPG81_06650) - 1389237..1390760 (-) 1524 Protein_1301 hypothetical protein -
  MPG81_RS06660 (MPG81_06660) - 1390767..1391060 (-) 294 WP_245086849.1 hypothetical protein -
  MPG81_RS06665 (MPG81_06665) - 1391080..1391851 (-) 772 Protein_1303 hypothetical protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23335.16 Da        Isoelectric Point: 10.2563

>NTDB_id=576468 MPG81_RS06630 WP_342370456.1 1387193..1387804(-) (comB4) [Helicobacter pylori strain Hpfe019]
MDNIPKAKAEKRIETKRKRANKSIRVEIDELNDMIKTDRVLMQEISLNILVHAKTKTDLDSACIEITNLLKQKGIVSAQE
SIGMLPMFFSFFPNRNRLNFRKRLLSSQNIASLIILEKQNCGFSRNSWGDRHLTIFRNQDKSPYLFNFHAYEAKRKNDMV
SGHTIIFGGTGAGKTTLIEFLITNCFKYEDLSILALDRKMACV

Nucleotide


Download         Length: 612 bp        

>NTDB_id=576468 MPG81_RS06630 WP_342370456.1 1387193..1387804(-) (comB4) [Helicobacter pylori strain Hpfe019]
ATTGACAATATTCCTAAAGCAAAGGCTGAAAAAAGGATTGAAACTAAAAGAAAAAGAGCGAATAAGAGCATTAGAGTTGA
AATTGATGAATTGAATGACATGATTAAAACAGACAGGGTTTTGATGCAGGAGATTTCTTTAAACATTTTAGTTCATGCCA
AAACTAAAACCGATTTAGATAGTGCTTGTATAGAAATTACCAACTTGCTTAAACAAAAAGGTATTGTAAGCGCACAAGAG
AGTATTGGTATGTTGCCTATGTTTTTTAGCTTTTTCCCCAATCGTAATCGCTTGAATTTTAGAAAGCGTTTGTTGTCTAG
TCAAAATATTGCTTCTTTAATCATATTGGAAAAACAAAATTGTGGTTTTTCTAGAAATTCATGGGGTGATCGCCATTTAA
CTATTTTTAGAAACCAAGACAAATCGCCTTATTTATTCAATTTCCATGCTTATGAGGCAAAAAGAAAAAATGATATGGTA
TCAGGGCATACCATCATCTTTGGTGGCACAGGGGCTGGTAAAACCACTTTAATTGAATTTTTAATCACCAATTGTTTTAA
GTATGAAGATTTAAGTATTTTAGCTTTAGACAGAAAAATGGCATGCGTGTGA

Domains

Predicted by InterProScan.

CagE, TrbE, VirB family, component of type IV transporter system (CagE_TrbE_VirB)

(2-101)

Helicase HerA, central domain (DUF87)

(157-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB4 Helicobacter pylori 26695

43.017

88.177

0.379