Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB4   Type   Machinery gene
Locus tag   MPG81_RS06620 Genome accession   NZ_CP094151
Coordinates   1386256..1386789 (-) Length   177 a.a.
NCBI ID   WP_342370445.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1381256..1391789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS06585 (MPG81_06585) infC 1381823..1382434 (+) 612 WP_050850833.1 translation initiation factor IF-3 -
  MPG81_RS06590 (MPG81_06590) rpmI 1382415..1382609 (+) 195 WP_001125542.1 50S ribosomal protein L35 -
  MPG81_RS06595 (MPG81_06595) rplT 1382704..1383054 (+) 351 WP_001264172.1 50S ribosomal protein L20 -
  MPG81_RS06600 (MPG81_06600) - 1383255..1384115 (+) 861 WP_000750190.1 outer membrane protein -
  MPG81_RS06605 (MPG81_06605) - 1384472..1384659 (+) 188 Protein_1293 DUF1104 domain-containing protein -
  MPG81_RS08000 - 1384622..1386253 (-) 1632 Protein_1294 type IA DNA topoisomerase -
  MPG81_RS06620 (MPG81_06620) comB4 1386256..1386789 (-) 534 WP_342370445.1 TraM recognition domain-containing protein Machinery gene
  MPG81_RS06625 (MPG81_06625) - 1387029..1387193 (-) 165 WP_245086839.1 hypothetical protein -
  MPG81_RS06630 (MPG81_06630) comB4 1387193..1387804 (-) 612 WP_342370456.1 DUF87 domain-containing protein Machinery gene
  MPG81_RS06635 (MPG81_06635) - 1387711..1388622 (-) 912 WP_245086841.1 hypothetical protein -
  MPG81_RS06640 (MPG81_06640) comB3 1388669..1388935 (-) 267 WP_245086843.1 virB3 type IV secretion protein Machinery gene
  MPG81_RS06645 (MPG81_06645) - 1388936..1389240 (-) 305 Protein_1300 virB2 type IV secretion protein -
  MPG81_RS06650 (MPG81_06650) - 1389237..1390760 (-) 1524 Protein_1301 hypothetical protein -
  MPG81_RS06660 (MPG81_06660) - 1390767..1391060 (-) 294 WP_245086849.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 20152.47 Da        Isoelectric Point: 9.5946

>NTDB_id=576467 MPG81_RS06620 WP_342370445.1 1386256..1386789(-) (comB4) [Helicobacter pylori strain Hpfe019]
MAVPYLFYKAMNRAKLENKPFYIFIDEAKSVIENPIMLAKIKDTLAQARKLNGVLTLAFQDINQLDCVEGAKSIIENTAQ
VILYPTNNFEKLESYGILLSPIEKSFLSKTPLNARQVLVKNLLTQSSVFLEINLEKLNSTSKKFLRAYSSSASSVFELET
LKKDNPKNYKEIYLTKE

Nucleotide


Download         Length: 534 bp        

>NTDB_id=576467 MPG81_RS06620 WP_342370445.1 1386256..1386789(-) (comB4) [Helicobacter pylori strain Hpfe019]
TTGGCAGTGCCATACCTATTCTACAAAGCCATGAATAGAGCTAAATTAGAAAACAAGCCTTTTTATATATTCATTGATGA
AGCAAAATCTGTTATTGAAAATCCCATCATGTTAGCTAAAATCAAAGACACACTCGCTCAAGCTAGAAAACTCAATGGGG
TTTTAACTTTAGCCTTTCAAGACATTAACCAACTTGATTGTGTAGAGGGAGCAAAGTCCATTATAGAAAACACCGCTCAA
GTCATACTCTATCCTACAAACAATTTTGAGAAATTAGAGAGCTATGGCATTTTATTAAGTCCTATTGAAAAATCATTTTT
AAGCAAAACGCCGTTAAATGCTAGGCAAGTATTAGTGAAAAACCTTCTCACTCAATCTAGCGTATTTTTAGAAATCAATT
TAGAAAAGCTAAACAGCACCAGTAAAAAATTTTTAAGAGCGTATAGCTCTAGTGCGTCTAGCGTTTTTGAACTGGAAACA
CTTAAAAAAGATAATCCAAAGAATTATAAAGAAATTTACTTGACAAAGGAGTAG

Domains

Predicted by InterProScan.

TraM recognition site of TraD and TraG (TraG-D_C)

(20-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB4 Helicobacter pylori 26695

42.262

94.915

0.401