Detailed information NTG0057638

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: TOL_RS13825
• Genome accession: NC_020888
• Coordinates: 3029108..3030469 (+)
• Length: 453 a.a.
• NCBI ID: WP_015487974.1
• Uniprot ID: M5DUN4
• Organism: Thalassolituus oleivorans MIL-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3024108..3035469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TOL_RS13810 (TOL_2864)	-	3024635..3025456 (+)	822	WP_015487970.1	outer membrane protein assembly factor BamD	-
TOL_RS13815 (TOL_2866)	-	3025724..3027346 (-)	1623	WP_015487972.1	NAD+ synthase	-
TOL_RS13820 (TOL_2867)	-	3027432..3028949 (+)	1518	WP_051052421.1	sensor histidine kinase	-
TOL_RS13825 (TOL_2868)	pilR	3029108..3030469 (+)	1362	WP_015487974.1	sigma-54-dependent transcriptional regulator	Regulator
TOL_RS13830 (TOL_2869)	-	3030573..3031130 (+)	558	WP_015487975.1	GspH/FimT family pseudopilin	-
TOL_RS13835 (TOL_2870)	-	3031243..3031764 (+)	522	WP_041588510.1	pilus assembly PilX family protein	-
TOL_RS13840 (TOL_2871)	-	3031761..3035171 (+)	3411	WP_015487977.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50845.29 Da
• Isoelectric Point: 4.9503

>NTDB_id=57638 TOL_RS13825 WP_015487974.1 3029108..3030469(+) (pilR) [Thalassolituus oleivorans MIL-1]
MQAVHTALIVDDEPDIRRLIALTLERMGLVCYQAENVSEALTSLEERQYHFCITDMKLPDGDGLELTQLCNRKYPDMPIA
MITAYGNMDLAVNALKSGAFDFVAKPIDTERLRQLVKAALQLTRIQTIRPISYSELLGATPCMIELKDKIRKVARTQAPV
FVYGESGTGKELVAQLIHSQSARADKPFIAVNCGAIPAELMESEFFGHIKGSFTGALNNKNGFFKAANGGTLFLDEVAEL
PLDLQVKLLRVVQEKSVRSVGAEVEEHIDVRIVTASHEDLAAMVNDHQFRQDLYFRLNVIQLDVPRLSERKDDIEELTHH
FITKYANEWSMPSTKLSEEALAALLEYSFPGNVRELENILQRAFTMMEGDIIRLDDLYFPANIAAELDSVTDDTPKEHAP
IATNNLEGYLENIEKRAIEEALLATRWNKTAAAEKLGISFRALRYRCKKLGID

Nucleotide

• Length: 1362 bp

>NTDB_id=57638 TOL_RS13825 WP_015487974.1 3029108..3030469(+) (pilR) [Thalassolituus oleivorans MIL-1]
ATGCAAGCTGTACACACAGCACTCATCGTCGATGATGAACCCGATATTCGTCGTTTAATTGCGCTCACACTCGAACGTAT
GGGCCTAGTCTGCTATCAAGCAGAAAACGTAAGCGAAGCGCTAACCTCGCTAGAGGAGCGGCAATATCACTTCTGCATAA
CCGATATGAAACTCCCCGATGGTGATGGTCTGGAGCTTACCCAGCTGTGCAATCGCAAATATCCCGACATGCCCATTGCT
ATGATTACGGCCTACGGCAATATGGATCTCGCCGTCAACGCCCTCAAATCAGGCGCATTCGACTTTGTCGCTAAGCCAAT
TGATACCGAACGTCTGCGTCAACTTGTTAAGGCCGCACTGCAACTAACACGTATTCAGACCATTCGCCCCATATCTTACA
GTGAACTACTGGGCGCGACTCCCTGTATGATTGAGCTAAAAGATAAAATCCGCAAAGTCGCGCGCACCCAAGCACCCGTT
TTTGTCTACGGGGAATCGGGCACGGGAAAAGAACTGGTCGCACAACTCATACACAGCCAAAGCGCACGCGCAGACAAGCC
TTTCATTGCTGTCAATTGCGGAGCTATTCCGGCCGAGTTAATGGAAAGCGAATTTTTTGGTCATATAAAAGGAAGTTTTA
CAGGAGCGCTAAATAATAAAAATGGCTTTTTCAAAGCCGCAAATGGCGGCACCTTATTTCTAGACGAAGTAGCCGAATTG
CCGCTCGATTTGCAAGTAAAACTCCTGCGCGTAGTGCAAGAGAAATCGGTACGTAGCGTTGGCGCCGAAGTCGAAGAGCA
CATTGATGTTCGTATTGTAACCGCGAGCCATGAAGATCTAGCGGCGATGGTAAATGACCATCAATTTCGCCAAGACTTAT
ATTTTCGCCTTAATGTTATTCAACTAGACGTCCCCCGCCTATCCGAGCGTAAAGACGATATTGAAGAATTAACCCACCAC
TTTATTACCAAGTACGCCAACGAGTGGAGCATGCCCAGTACGAAGTTGAGCGAAGAAGCGCTGGCCGCATTGTTGGAATA
TTCGTTTCCCGGCAACGTGCGTGAACTAGAAAACATCTTGCAGCGCGCCTTCACCATGATGGAAGGCGATATTATTCGCT
TAGATGATTTGTATTTTCCCGCAAATATCGCCGCCGAACTGGATTCTGTTACTGACGACACACCTAAAGAGCACGCTCCC
ATTGCGACCAACAACCTTGAAGGTTACCTCGAAAACATTGAAAAACGCGCGATAGAAGAAGCTCTCCTAGCCACTCGCTG
GAATAAAACGGCAGCGGCAGAAAAGCTTGGTATTAGCTTCCGAGCGCTGCGCTATCGTTGTAAGAAATTAGGCATAGATT
AA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (410-450)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: M5DUN4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	53.452	99.117	0.53
pilR	Acinetobacter baumannii strain A118	49.127	100	0.497