Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG61_RS02980 Genome accession   NZ_CP094148
Coordinates   618959..619510 (+) Length   183 a.a.
NCBI ID   WP_154498450.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 613959..624510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG61_RS02965 (MPG61_02965) cysS 614138..615535 (-) 1398 WP_245020707.1 cysteine--tRNA ligase -
  MPG61_RS02970 (MPG61_02970) murJ 615536..616996 (-) 1461 WP_245020708.1 murein biosynthesis integral membrane protein MurJ -
  MPG61_RS02975 (MPG61_02975) - 617089..618933 (+) 1845 WP_245020709.1 FapA family protein -
  MPG61_RS02980 (MPG61_02980) ruvA 618959..619510 (+) 552 WP_154498450.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG61_RS02985 (MPG61_02985) - 619555..621684 (+) 2130 WP_245020795.1 DUF3519 domain-containing protein -
  MPG61_RS07690 - 621699..621830 (+) 132 WP_280636986.1 hypothetical protein -
  MPG61_RS02990 (MPG61_02990) - 621817..622176 (+) 360 Protein_572 ATPase -
  MPG61_RS02995 (MPG61_02995) - 622215..623351 (-) 1137 WP_180614042.1 NAD-binding protein -
  MPG61_RS03000 (MPG61_03000) rpmB 623501..623689 (-) 189 WP_001119000.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20155.72 Da        Isoelectric Point: 9.4305

>NTDB_id=576322 MPG61_RS02980 WP_154498450.1 618959..619510(+) (ruvA) [Helicobacter pylori strain Hpfe024]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTRNEVFLALESLGFKSAEINKV
LKTLKPNLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=576322 MPG61_RS02980 WP_154498450.1 618959..619510(+) (ruvA) [Helicobacter pylori strain Hpfe024]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCACATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGTCAAAAGGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCTACTAAAGAAGTCAA
AAGACTCCAACAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTACGCGCAATGAAGTCTTTTTAGCCTTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(140-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

94.536

100

0.945
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366