Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   MPG61_RS00870 Genome accession   NZ_CP094148
Coordinates   185203..186165 (+) Length   320 a.a.
NCBI ID   WP_220925210.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe024     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 180203..191165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG61_RS00840 (MPG61_00840) panD 181629..181982 (+) 354 WP_220925212.1 aspartate 1-decarboxylase -
  MPG61_RS00845 (MPG61_00845) - 181985..182278 (+) 294 WP_048944407.1 YbaB/EbfC family nucleoid-associated protein -
  MPG61_RS00850 (MPG61_00850) - 182278..183273 (+) 996 WP_245020787.1 PDZ domain-containing protein -
  MPG61_RS00855 (MPG61_00855) comB6 183279..184334 (+) 1056 WP_245020515.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG61_RS00860 (MPG61_00860) comB7 184350..184463 (+) 114 WP_245020516.1 comB7 lipoprotein Machinery gene
  MPG61_RS00865 (MPG61_00865) comB8 184460..185203 (+) 744 WP_000660524.1 virB8 family protein Machinery gene
  MPG61_RS00870 (MPG61_00870) comB9 185203..186165 (+) 963 WP_220925210.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG61_RS00875 (MPG61_00875) comB10 186158..187294 (+) 1137 WP_245020517.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG61_RS00880 (MPG61_00880) - 187364..188776 (+) 1413 WP_245020518.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG61_RS00885 (MPG61_00885) gmd 188790..189935 (+) 1146 WP_050853660.1 GDP-mannose 4,6-dehydratase -
  MPG61_RS00890 (MPG61_00890) - 189928..190860 (+) 933 WP_245020519.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36907.50 Da        Isoelectric Point: 9.4631

>NTDB_id=576316 MPG61_RS00870 WP_220925210.1 185203..186165(+) (comB9) [Helicobacter pylori strain Hpfe024]
MRKVLYALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQRGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=576316 MPG61_RS00870 WP_220925210.1 185203..186165(+) (comB9) [Helicobacter pylori strain Hpfe024]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAGG
ACATTCAAAGAGGCTATAGGGCTTTAAAAAGTTCTCAAAGGAAATGGTATTGCTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterProScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.025

100

0.938