Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG51_RS02820 Genome accession   NZ_CP094145
Coordinates   586902..587453 (+) Length   183 a.a.
NCBI ID   WP_245034770.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 581902..592453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG51_RS02805 (MPG51_02805) cysS 582082..583479 (-) 1398 WP_245034764.1 cysteine--tRNA ligase -
  MPG51_RS02810 (MPG51_02810) murJ 583480..584940 (-) 1461 WP_245034766.1 murein biosynthesis integral membrane protein MurJ -
  MPG51_RS02815 (MPG51_02815) - 585033..586877 (+) 1845 WP_245034768.1 FapA family protein -
  MPG51_RS02820 (MPG51_02820) ruvA 586902..587453 (+) 552 WP_245034770.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG51_RS02825 (MPG51_02825) - 587757..590130 (+) 2374 Protein_540 DUF3519 domain-containing protein -
  MPG51_RS02835 (MPG51_02835) - 590244..590639 (+) 396 WP_245034776.1 hypothetical protein -
  MPG51_RS02840 (MPG51_02840) - 590641..591777 (-) 1137 WP_000462008.1 NAD-binding protein -
  MPG51_RS02845 (MPG51_02845) rpmB 591925..592113 (-) 189 WP_001119008.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20209.81 Da        Isoelectric Point: 9.4311

>NTDB_id=576237 MPG51_RS02820 WP_245034770.1 586902..587453(+) (ruvA) [Helicobacter pylori strain Hpfe028]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDVHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTRNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=576237 MPG51_RS02820 WP_245034770.1 586902..587453(+) (ruvA) [Helicobacter pylori strain Hpfe028]
ATGATAGTGGGTTTGATAGGGGTTGTAGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGTGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAGCATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACCAGCCCTACGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(140-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361