Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG02_RS02825 Genome accession   NZ_CP094142
Coordinates   589602..590153 (+) Length   183 a.a.
NCBI ID   WP_120892252.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584602..595153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG02_RS02810 (MPG02_02810) cysS 584782..586179 (-) 1398 WP_245075699.1 cysteine--tRNA ligase -
  MPG02_RS02815 (MPG02_02815) murJ 586180..587640 (-) 1461 WP_245075701.1 murein biosynthesis integral membrane protein MurJ -
  MPG02_RS02820 (MPG02_02820) - 587733..589577 (+) 1845 WP_245075703.1 FapA family protein -
  MPG02_RS02825 (MPG02_02825) ruvA 589602..590153 (+) 552 WP_120892252.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG02_RS02830 (MPG02_02830) - 590243..590419 (-) 177 WP_245075705.1 hypothetical protein -
  MPG02_RS02835 (MPG02_02835) - 590481..592574 (+) 2094 WP_245075707.1 DUF3519 domain-containing protein -
  MPG02_RS02840 (MPG02_02840) - 592602..592967 (+) 366 WP_245075709.1 hypothetical protein -
  MPG02_RS02845 (MPG02_02845) - 592999..594135 (-) 1137 WP_000462009.1 NAD-binding protein -
  MPG02_RS02850 (MPG02_02850) rpmB 594285..594473 (-) 189 WP_001119000.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20178.76 Da        Isoelectric Point: 9.4311

>NTDB_id=576121 MPG02_RS02825 WP_120892252.1 589602..590153(+) (ruvA) [Helicobacter pylori strain Hpfe033]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTRNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=576121 MPG02_RS02825 WP_120892252.1 589602..590153(+) (ruvA) [Helicobacter pylori strain Hpfe033]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACCAGCCCTACGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(140-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366