Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KNV92_RS14530 Genome accession   NZ_CP076514
Coordinates   2975753..2976397 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain WB     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2970753..2981397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV92_RS14495 (KNV92_14495) - 2971938..2972369 (+) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -
  KNV92_RS14500 (KNV92_14500) - 2972369..2972710 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  KNV92_RS14505 (KNV92_14505) - 2972703..2974184 (+) 1482 WP_094247541.1 Na+/H+ antiporter subunit D -
  KNV92_RS14510 (KNV92_14510) - 2974190..2974666 (+) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  KNV92_RS14515 (KNV92_14515) - 2974666..2974950 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  KNV92_RS14520 (KNV92_14520) mnhG 2974934..2975308 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  KNV92_RS14525 (KNV92_14525) - 2975348..2975731 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  KNV92_RS14530 (KNV92_14530) comA 2975753..2976397 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  KNV92_RS14535 (KNV92_14535) comP 2976478..2978781 (-) 2304 WP_220181546.1 histidine kinase Regulator
  KNV92_RS14540 (KNV92_14540) comX 2978793..2978957 (-) 165 WP_007613432.1 competence pheromone ComX -
  KNV92_RS14545 (KNV92_14545) - 2978957..2979868 (-) 912 WP_031378407.1 polyprenyl synthetase family protein -
  KNV92_RS14550 (KNV92_14550) degQ 2980020..2980160 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  KNV92_RS14555 (KNV92_14555) - 2980625..2980966 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=576055 KNV92_RS14530 WP_003152052.1 2975753..2976397(-) (comA) [Bacillus velezensis strain WB]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=576055 KNV92_RS14530 WP_003152052.1 2975753..2976397(-) (comA) [Bacillus velezensis strain WB]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCACGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864