Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KPF77_RS03250 Genome accession   NZ_CP076510
Coordinates   644187..644957 (+) Length   256 a.a.
NCBI ID   WP_002781662.1    Uniprot ID   A0A3Z9V747
Organism   Campylobacter coli strain R19.0802     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 639187..649957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF77_RS03235 (KPF77_03235) - 640084..642018 (-) 1935 WP_002816777.1 ribonuclease R family protein -
  KPF77_RS03240 (KPF77_03240) ilvC 642141..643163 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  KPF77_RS03245 (KPF77_03245) - 643166..644197 (+) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  KPF77_RS03250 (KPF77_03250) dprA 644187..644957 (+) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  KPF77_RS03255 (KPF77_03255) ruvX 644954..645334 (+) 381 WP_052774085.1 Holliday junction resolvase RuvX -
  KPF77_RS03260 (KPF77_03260) - 645345..646199 (+) 855 WP_371827847.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KPF77_RS03265 (KPF77_03265) msrA 646422..646922 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KPF77_RS03270 (KPF77_03270) ppa 646970..647488 (-) 519 WP_002776378.1 inorganic diphosphatase -
  KPF77_RS03275 (KPF77_03275) - 647498..648073 (-) 576 WP_002781658.1 adenylate kinase -
  KPF77_RS03280 (KPF77_03280) aspS 648070..649821 (-) 1752 WP_002812716.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28817.22 Da        Isoelectric Point: 5.0727

>NTDB_id=575949 KPF77_RS03250 WP_002781662.1 644187..644957(+) (dprA) [Campylobacter coli strain R19.0802]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=575949 KPF77_RS03250 WP_002781662.1 644187..644957(+) (dprA) [Campylobacter coli strain R19.0802]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9V747

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.917

93.75

0.449