Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   JP49775_RS06370 Genome accession   NZ_AP017922
Coordinates   1302393..1304381 (+) Length   662 a.a.
NCBI ID   WP_000481439.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP02758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1297393..1309381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JP49775_RS06330 (JP02758_1200) rpmG 1297474..1297623 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  JP49775_RS06335 (JP02758_1201) rpsN 1298077..1298346 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  JP49775_RS06340 (JP02758_1202) guaC 1298503..1299480 (+) 978 WP_000688126.1 GMP reductase -
  JP49775_RS06350 (JP02758_1203) - 1299502..1300518 (+) 1017 WP_173020057.1 CAP domain-containing protein -
  JP49775_RS06355 (JP02758_1204) dinR/lexA 1300898..1301521 (-) 624 WP_001208755.1 transcriptional repressor LexA Regulator
  JP49775_RS06360 (JP02758_1205) sosA 1301664..1301897 (+) 234 WP_000499646.1 DNA damage-induced cell division inhibitor SosA -
  JP49775_RS06365 (JP02758_1206) - 1302033..1302272 (+) 240 WP_000071351.1 DUF896 domain-containing protein -
  JP49775_RS06370 (JP02758_1207) recP/tkt 1302393..1304381 (+) 1989 WP_000481439.1 transketolase Machinery gene
  JP49775_RS06375 (JP02758_1208) - 1304659..1304901 (+) 243 WP_000246909.1 YneF family protein -
  JP49775_RS06380 - 1304888..1304986 (+) 99 WP_001789897.1 hypothetical protein -
  JP49775_RS06385 (JP02758_1209) - 1305080..1305547 (+) 468 WP_000966144.1 CcdC family protein -
  JP49775_RS06390 (JP02758_1210) sbcD 1305671..1306792 (+) 1122 WP_029550003.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72280.82 Da        Isoelectric Point: 4.6804

>NTDB_id=57590 JP49775_RS06370 WP_000481439.1 1302393..1304381(+) (recP/tkt) [Staphylococcus aureus strain JP02758]
MFNEKDQLAVDTLRALSIDTIEKANSGHPGLPMGAAPMAYTLWTRHLNFNPQSKDYFNRDRFVLSAGHGSALLYSLLHVS
GSLELEELKQFRQWGSKTPGHPEYRHTDGVEVTTGPLGQGFAMSVGLALAEDHLAGKFNKEGYNVVDHYTYVLASDGDLM
EGISHEAASFAGHNKLSKLVVLYDSNDISLDGELNKAFSENTKARFEAYGWNYLLVKDGNDLEEIDKAITTAKSQEGPTI
IEVKTTIGFGSPNKAGTNGVHGAPLGEDERKLTFENYGLDPEKRFNVSEEVYEIFQNTMLKRANEDESQWNSLLEKYAET
YPELAEEFKLAISGKLPKNYKDELPRFELGHNGASRADSGTVIQAISKTVPSFFGGSADLAGSNKSNVNDATDYSSETPE
GKNVWFGVREFAMGAAVNGMAAHGGLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAG
LRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTVYGSEETPEFLLLASGSE
VSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESIIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAP
GDLVVEKYGFTKENILNQVMSL

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=57590 JP49775_RS06370 WP_000481439.1 1302393..1304381(+) (recP/tkt) [Staphylococcus aureus strain JP02758]
ATGTTTAATGAAAAAGATCAATTAGCTGTTGATACGCTACGTGCACTAAGTATCGACACAATCGAAAAAGCGAATTCTGG
TCATCCAGGATTACCTATGGGAGCTGCCCCAATGGCTTACACTTTGTGGACACGTCATCTGAATTTTAATCCACAATCTA
AAGATTACTTCAATAGAGACCGTTTCGTATTATCTGCAGGGCATGGTTCAGCACTATTGTATAGCTTGTTACATGTTTCT
GGTAGTTTAGAATTAGAAGAATTAAAGCAATTTAGACAATGGGGTTCTAAAACACCAGGTCATCCTGAATACAGACATAC
AGATGGTGTAGAAGTTACTACTGGACCACTTGGACAAGGTTTTGCTATGTCAGTTGGATTAGCTTTAGCAGAAGATCACC
TAGCAGGGAAATTTAATAAAGAAGGATATAATGTTGTAGATCATTACACATATGTATTAGCTTCTGACGGTGATTTAATG
GAAGGTATCTCGCATGAAGCAGCTTCATTTGCTGGACATAATAAATTAAGTAAATTAGTTGTTTTATACGATTCAAATGA
TATTTCATTAGATGGCGAATTAAACAAAGCTTTTTCTGAAAACACAAAAGCTCGTTTTGAAGCATATGGTTGGAATTACT
TACTAGTTAAAGATGGTAATGATTTAGAAGAAATTGATAAAGCGATTACTACAGCTAAATCTCAAGAAGGACCAACAATT
ATTGAAGTTAAAACAACAATCGGATTTGGTTCACCGAATAAAGCAGGAACTAATGGTGTTCATGGGGCACCTTTAGGTGA
AGATGAAAGAAAATTAACATTCGAAAATTACGGTTTAGATCCTGAAAAACGTTTTAATGTTTCAGAAGAAGTATACGAAA
TTTTCCAAAATACTATGTTAAAACGTGCTAATGAAGATGAATCTCAATGGAATTCATTATTAGAAAAATATGCAGAAACA
TATCCTGAATTAGCAGAAGAATTTAAATTAGCAATTAGTGGTAAATTGCCTAAAAATTATAAGGATGAATTACCACGTTT
TGAACTTGGTCATAATGGTGCATCTCGTGCTGATTCTGGTACTGTTATTCAAGCAATCAGTAAAACTGTCCCTTCATTCT
TTGGTGGATCAGCAGACCTTGCTGGTTCAAACAAATCCAATGTAAATGATGCAACAGATTATAGTTCTGAAACACCTGAA
GGTAAAAATGTGTGGTTTGGTGTACGTGAATTTGCTATGGGTGCTGCTGTAAATGGTATGGCTGCACATGGAGGTTTACA
TCCATATGGTGCAACATTCTTCGTATTTAGTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATG
CTACGTTCATCTTCACACATGATTCAATTGCAGTTGGTGAAGATGGTCCTACTCATGAACCAATTGAACAATTAGCTGGA
CTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCAGATGGTAATGAAACAAGAGTAGCATGGGAAGTTGCCTTAGA
ATCTGAATCTACACCTACTTCATTAGTATTGACACGTCAAAACTTACCGGTTTTAGATGTACCAGAAGATGTAGTTGAAG
AAGGCGTTCGAAAAGGTGCCTATACAGTTTATGGCTCTGAAGAGACACCAGAATTCCTACTATTAGCTTCAGGTTCAGAA
GTTAGTCTTGCAGTTGAAGCTGCTAAAGATCTTGAAAAACAAGGTAAATCAGTGCGTGTTGTTTCAATGCCTAACTGGAA
TGCATTTGAACAACAATCTGAAGAATATAAAGAATCAATTATTCCATCAAGCGTAACAAAACGTGTTGCGATTGAAATGG
CTTCACCGCTTGGATGGCATAAATATGTAGGTACTGCAGGTAAAGTTATTGCTATTGACGGCTTTGGCGCAAGTGCACCT
GGCGATCTAGTAGTTGAAAAATATGGCTTTACAAAAGAAAATATCTTAAACCAAGTTATGAGCTTATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-655)

Transketolase, pyrimidine binding domain (Transket_pyr)

(359-523)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.255

100

0.556

Multiple sequence alignment