Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG50_RS02820 Genome accession   NZ_CP094134
Coordinates   585258..585809 (+) Length   183 a.a.
NCBI ID   WP_245032847.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580258..590809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG50_RS02805 (MPG50_02805) cysS 580437..581834 (-) 1398 WP_245032841.1 cysteine--tRNA ligase -
  MPG50_RS02810 (MPG50_02810) murJ 581835..583295 (-) 1461 WP_245032843.1 murein biosynthesis integral membrane protein MurJ -
  MPG50_RS02815 (MPG50_02815) - 583388..585232 (+) 1845 WP_245032845.1 FapA family protein -
  MPG50_RS02820 (MPG50_02820) ruvA 585258..585809 (+) 552 WP_245032847.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG50_RS02825 (MPG50_02825) - 585838..586807 (+) 970 Protein_538 DUF3519 domain-containing protein -
  MPG50_RS02830 (MPG50_02830) - 587467..588192 (-) 726 WP_000646759.1 NYN domain-containing protein -
  MPG50_RS02835 (MPG50_02835) ruvC 588322..588804 (+) 483 WP_245032849.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20143.71 Da        Isoelectric Point: 8.5032

>NTDB_id=575841 MPG50_RS02820 WP_245032847.1 585258..585809(+) (ruvA) [Helicobacter pylori strain Hpfe048]
MIVGLIGVVEKISALEAHIEVQGVVYGVQISMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575841 MPG50_RS02820 WP_245032847.1 585258..585809(+) (ruvA) [Helicobacter pylori strain Hpfe048]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
AGTGCAAATTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAACTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACCAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGTGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-182)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366