Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG57_RS02865 Genome accession   NZ_CP094132
Coordinates   591153..591704 (+) Length   183 a.a.
NCBI ID   WP_180425358.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586153..596704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG57_RS02850 (MPG57_02850) cysS 586333..587730 (-) 1398 WP_180658569.1 cysteine--tRNA ligase -
  MPG57_RS02855 (MPG57_02855) murJ 587731..589191 (-) 1461 WP_245081530.1 murein biosynthesis integral membrane protein MurJ -
  MPG57_RS02860 (MPG57_02860) - 589284..591128 (+) 1845 WP_245081532.1 FapA family protein -
  MPG57_RS02865 (MPG57_02865) ruvA 591153..591704 (+) 552 WP_180425358.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG57_RS02870 (MPG57_02870) - 591959..594403 (+) 2445 Protein_548 DUF3519 domain-containing protein -
  MPG57_RS02875 (MPG57_02875) - 594453..594824 (+) 372 Protein_549 DUF1542 domain-containing protein -
  MPG57_RS02880 (MPG57_02880) - 594849..595985 (-) 1137 WP_000462008.1 NAD-binding protein -
  MPG57_RS02885 (MPG57_02885) rpmB 596134..596322 (-) 189 WP_001119008.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20182.75 Da        Isoelectric Point: 9.4311

>NTDB_id=575760 MPG57_RS02865 WP_180425358.1 591153..591704(+) (ruvA) [Helicobacter pylori strain Hpfe051]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHFLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575760 MPG57_RS02865 WP_180425358.1 591153..591704(+) (ruvA) [Helicobacter pylori strain Hpfe051]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAGGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCACATTTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGCTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361