Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG85_RS02870 Genome accession   NZ_CP094129
Coordinates   589452..590003 (+) Length   183 a.a.
NCBI ID   WP_180400459.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584452..595003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG85_RS02855 (MPG85_02855) cysS 584631..586028 (-) 1398 WP_245051264.1 cysteine--tRNA ligase -
  MPG85_RS02860 (MPG85_02860) murJ 586029..587489 (-) 1461 WP_245051266.1 murein biosynthesis integral membrane protein MurJ -
  MPG85_RS02865 (MPG85_02865) - 587582..589426 (+) 1845 WP_245051268.1 FapA family protein -
  MPG85_RS02870 (MPG85_02870) ruvA 589452..590003 (+) 552 WP_180400459.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG85_RS02875 (MPG85_02875) - 590093..590269 (-) 177 WP_245051270.1 hypothetical protein -
  MPG85_RS02880 (MPG85_02880) - 590331..593462 (+) 3132 WP_245051511.1 DUF3519 domain-containing protein -
  MPG85_RS02885 (MPG85_02885) - 593851..594576 (-) 726 WP_000646759.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20208.79 Da        Isoelectric Point: 9.4311

>NTDB_id=575641 MPG85_RS02870 WP_180400459.1 589452..590003(+) (ruvA) [Helicobacter pylori strain Hpfe054]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTRNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575641 MPG85_RS02870 WP_180400459.1 589452..590003(+) (ruvA) [Helicobacter pylori strain Hpfe054]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATTCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTGGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAACAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTACGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(140-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366