Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   I653_RS17095 Genome accession   NC_020832
Coordinates   3428650..3429339 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3423650..3434339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS17060 (I653_17245) flgN 3423830..3424312 (-) 483 WP_014481048.1 flagellar protein FlgN -
  I653_RS17065 (I653_17250) flgM 3424328..3424594 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  I653_RS17070 (I653_17255) yvyF 3424675..3425094 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  I653_RS17075 (I653_17260) comFC 3425168..3425890 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  I653_RS17080 (I653_17265) comFB 3425854..3426150 (-) 297 WP_015483764.1 late competence protein ComFB -
  I653_RS17085 (I653_17270) comFA 3426210..3427601 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  I653_RS17090 (I653_17275) fakBA 3427707..3428552 (-) 846 WP_015483765.1 DegV family protein -
  I653_RS17095 (I653_17280) degU 3428650..3429339 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I653_RS17100 (I653_17285) degS 3429422..3430579 (-) 1158 WP_015483766.1 two-component sensor histidine kinase DegS Regulator
  I653_RS17105 (I653_17290) yvyE 3430796..3431449 (+) 654 WP_003227979.1 YigZ family protein -
  I653_RS17110 (I653_17295) tagV 3431449..3432624 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  I653_RS17115 (I653_17300) tagO 3432697..3433773 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=57549 I653_RS17095 WP_003219701.1 3428650..3429339(-) (degU) [Bacillus subtilis subsp. subtilis str. BAB-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=57549 I653_RS17095 WP_003219701.1 3428650..3429339(-) (degU) [Bacillus subtilis subsp. subtilis str. BAB-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment