Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   I653_RS17085 Genome accession   NC_020832
Coordinates   3426210..3427601 (-) Length   463 a.a.
NCBI ID   WP_015384785.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3421210..3432601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS17050 (I653_17235) flgL 3421381..3422277 (-) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  I653_RS17055 (I653_17240) flgK 3422288..3423811 (-) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  I653_RS17060 (I653_17245) flgN 3423830..3424312 (-) 483 WP_014481048.1 flagellar protein FlgN -
  I653_RS17065 (I653_17250) flgM 3424328..3424594 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  I653_RS17070 (I653_17255) yvyF 3424675..3425094 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  I653_RS17075 (I653_17260) comFC 3425168..3425890 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  I653_RS17080 (I653_17265) comFB 3425854..3426150 (-) 297 WP_015483764.1 late competence protein ComFB -
  I653_RS17085 (I653_17270) comFA 3426210..3427601 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  I653_RS17090 (I653_17275) fakBA 3427707..3428552 (-) 846 WP_015483765.1 DegV family protein -
  I653_RS17095 (I653_17280) degU 3428650..3429339 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I653_RS17100 (I653_17285) degS 3429422..3430579 (-) 1158 WP_015483766.1 two-component sensor histidine kinase DegS Regulator
  I653_RS17105 (I653_17290) yvyE 3430796..3431449 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52498.54 Da        Isoelectric Point: 9.9354

>NTDB_id=57548 I653_RS17085 WP_015384785.1 3426210..3427601(-) (comFA) [Bacillus subtilis subsp. subtilis str. BAB-1]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLNLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=57548 I653_RS17085 WP_015384785.1 3426210..3427601(-) (comFA) [Bacillus subtilis subsp. subtilis str. BAB-1]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGGAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTATTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATT
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGTTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCAATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985

Multiple sequence alignment