Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   KOM03_RS07115 Genome accession   NZ_CP076450
Coordinates   1408170..1408289 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain GMEKP1     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1403170..1413289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS07100 (KOM03_07100) - 1404782..1405465 (+) 684 WP_060563078.1 response regulator transcription factor -
  KOM03_RS07105 (KOM03_07105) - 1405452..1406885 (+) 1434 WP_162262652.1 HAMP domain-containing sensor histidine kinase -
  KOM03_RS07110 (KOM03_07110) rapC 1407038..1408186 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  KOM03_RS07115 (KOM03_07115) phrC 1408170..1408289 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  KOM03_RS07120 (KOM03_07120) - 1408439..1408534 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  KOM03_RS07125 (KOM03_07125) - 1408629..1409993 (-) 1365 WP_060563080.1 aspartate kinase -
  KOM03_RS07130 (KOM03_07130) ceuB 1410409..1411362 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  KOM03_RS07135 (KOM03_07135) - 1411352..1412299 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  KOM03_RS07140 (KOM03_07140) - 1412293..1413051 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=575461 KOM03_RS07115 WP_003156334.1 1408170..1408289(+) (phrC) [Bacillus velezensis strain GMEKP1]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=575461 KOM03_RS07115 WP_003156334.1 1408170..1408289(+) (phrC) [Bacillus velezensis strain GMEKP1]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718