Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KOM03_RS07110 Genome accession   NZ_CP076450
Coordinates   1407038..1408186 (+) Length   382 a.a.
NCBI ID   WP_003156336.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402038..1413186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS07090 (KOM03_07090) - 1402435..1403118 (-) 684 WP_060563076.1 ABC transporter ATP-binding protein -
  KOM03_RS07095 (KOM03_07095) - 1403133..1404569 (-) 1437 WP_060563077.1 ABC transporter permease -
  KOM03_RS07100 (KOM03_07100) - 1404782..1405465 (+) 684 WP_060563078.1 response regulator transcription factor -
  KOM03_RS07105 (KOM03_07105) - 1405452..1406885 (+) 1434 WP_162262652.1 HAMP domain-containing sensor histidine kinase -
  KOM03_RS07110 (KOM03_07110) rapC 1407038..1408186 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  KOM03_RS07115 (KOM03_07115) phrC 1408170..1408289 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  KOM03_RS07120 (KOM03_07120) - 1408439..1408534 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  KOM03_RS07125 (KOM03_07125) - 1408629..1409993 (-) 1365 WP_060563080.1 aspartate kinase -
  KOM03_RS07130 (KOM03_07130) ceuB 1410409..1411362 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  KOM03_RS07135 (KOM03_07135) - 1411352..1412299 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  KOM03_RS07140 (KOM03_07140) - 1412293..1413051 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45521.82 Da        Isoelectric Point: 5.0732

>NTDB_id=575460 KOM03_RS07110 WP_003156336.1 1407038..1408186(+) (rapC) [Bacillus velezensis strain GMEKP1]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=575460 KOM03_RS07110 WP_003156336.1 1407038..1408186(+) (rapC) [Bacillus velezensis strain GMEKP1]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.199

100

0.822
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568