Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   KOM03_RS06925 Genome accession   NZ_CP076450
Coordinates   1348757..1349155 (-) Length   132 a.a.
NCBI ID   WP_060563061.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343757..1354155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS06900 (KOM03_06900) - 1343928..1345130 (+) 1203 WP_060563058.1 GTP-binding protein -
  KOM03_RS06905 (KOM03_06905) - 1345195..1346331 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  KOM03_RS06910 (KOM03_06910) - 1346346..1346780 (+) 435 WP_007409358.1 RDD family protein -
  KOM03_RS06915 (KOM03_06915) - 1346852..1347175 (+) 324 WP_060563059.1 YckD family protein -
  KOM03_RS06920 (KOM03_06920) - 1347280..1348716 (+) 1437 WP_060563060.1 family 1 glycosylhydrolase -
  KOM03_RS06925 (KOM03_06925) nin/comJ 1348757..1349155 (-) 399 WP_060563061.1 competence protein ComJ Regulator
  KOM03_RS06930 (KOM03_06930) nucA/comI 1349176..1349613 (-) 438 WP_060563062.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KOM03_RS06935 (KOM03_06935) hxlB 1349972..1350529 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  KOM03_RS06940 (KOM03_06940) hxlA 1350526..1351161 (-) 636 WP_060563063.1 3-hexulose-6-phosphate synthase -
  KOM03_RS06945 (KOM03_06945) - 1351393..1351770 (+) 378 WP_207169049.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14894.84 Da        Isoelectric Point: 4.7846

>NTDB_id=575458 KOM03_RS06925 WP_060563061.1 1348757..1349155(-) (nin/comJ) [Bacillus velezensis strain GMEKP1]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=575458 KOM03_RS06925 WP_060563061.1 1348757..1349155(-) (nin/comJ) [Bacillus velezensis strain GMEKP1]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758