Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KOM03_RS05140 Genome accession   NZ_CP076450
Coordinates   1010149..1011261 (+) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1005149..1016261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS05115 (KOM03_05115) rnpA 1005859..1006210 (-) 352 Protein_1006 ribonuclease P protein component -
  KOM03_RS05120 (KOM03_05120) rpmH 1006364..1006498 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  KOM03_RS05125 (KOM03_05125) dnaA 1007122..1008462 (+) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  KOM03_RS05130 (KOM03_05130) dnaN 1008647..1009783 (+) 1137 WP_007409909.1 DNA polymerase III subunit beta -
  KOM03_RS05135 (KOM03_05135) rlbA 1009918..1010133 (+) 216 WP_060562268.1 ribosome maturation protein RlbA -
  KOM03_RS05140 (KOM03_05140) recF 1010149..1011261 (+) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  KOM03_RS05145 (KOM03_05145) remB 1011279..1011524 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  KOM03_RS05150 (KOM03_05150) gyrB 1011581..1013497 (+) 1917 WP_060562565.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  KOM03_RS05155 (KOM03_05155) gyrA 1013713..1016181 (+) 2469 WP_032870831.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=575452 KOM03_RS05140 WP_007409910.1 1010149..1011261(+) (recF) [Bacillus velezensis strain GMEKP1]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=575452 KOM03_RS05140 WP_007409910.1 1010149..1011261(+) (recF) [Bacillus velezensis strain GMEKP1]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAT
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCCCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTATATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943