Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG78_RS05295 Genome accession   NZ_CP094119
Coordinates   1092401..1092952 (-) Length   183 a.a.
NCBI ID   WP_245039685.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1087401..1097952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG78_RS05275 (MPG78_05275) rpmB 1087889..1088077 (+) 189 WP_001119000.1 50S ribosomal protein L28 -
  MPG78_RS05280 (MPG78_05280) - 1088227..1089363 (+) 1137 WP_000462008.1 NAD-binding protein -
  MPG78_RS05285 (MPG78_05285) - 1089320..1089754 (-) 435 WP_245039684.1 hypothetical protein -
  MPG78_RS05290 (MPG78_05290) - 1089785..1092079 (-) 2295 WP_245041165.1 DUF3519 domain-containing protein -
  MPG78_RS07820 - 1092048..1092248 (+) 201 Protein_1045 hypothetical protein -
  MPG78_RS05295 (MPG78_05295) ruvA 1092401..1092952 (-) 552 WP_245039685.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG78_RS05300 (MPG78_05300) - 1092977..1094821 (-) 1845 WP_245039686.1 FapA family protein -
  MPG78_RS05305 (MPG78_05305) murJ 1094914..1096374 (+) 1461 WP_245039687.1 murein biosynthesis integral membrane protein MurJ -
  MPG78_RS05310 (MPG78_05310) cysS 1096375..1097772 (+) 1398 WP_245039688.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20122.80 Da        Isoelectric Point: 9.4568

>NTDB_id=575378 MPG78_RS05295 WP_245039685.1 1092401..1092952(-) (ruvA) [Helicobacter pylori strain Hpfe064]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFKNIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPVCNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575378 MPG78_RS05295 WP_245039685.1 1092401..1092952(-) (ruvA) [Helicobacter pylori strain Hpfe064]
ATGATAGTGGGCTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCACATATAGAAGTGCAAGGGGTTGTTTATGG
AGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTAAAAACATTATCGCCACTAAAGAAGTTAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGTGTGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(141-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

92.896

100

0.929
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361