Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KMZ16_RS18195 Genome accession   NZ_CP076445
Coordinates   3511174..3511863 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3506174..3516863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS18160 (KMZ16_18005) flgN 3506354..3506836 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KMZ16_RS18165 (KMZ16_18010) flgM 3506852..3507118 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KMZ16_RS18170 (KMZ16_18015) yvyF 3507199..3507618 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KMZ16_RS18175 (KMZ16_18020) comFC 3507692..3508414 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  KMZ16_RS18180 (KMZ16_18025) comFB 3508378..3508674 (-) 297 WP_015483764.1 late competence protein ComFB -
  KMZ16_RS18185 (KMZ16_18030) comFA 3508734..3510125 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  KMZ16_RS18190 (KMZ16_18035) fakBA 3510231..3511076 (-) 846 WP_003227986.1 DegV family protein -
  KMZ16_RS18195 (KMZ16_18040) degU 3511174..3511863 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KMZ16_RS18200 (KMZ16_18045) degS 3511946..3513103 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KMZ16_RS18205 (KMZ16_18050) yvyE 3513320..3513973 (+) 654 WP_003227979.1 YigZ family protein -
  KMZ16_RS18210 (KMZ16_18055) tagV 3513973..3515148 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  KMZ16_RS18215 (KMZ16_18060) tagO 3515221..3516297 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=575372 KMZ16_RS18195 WP_003219701.1 3511174..3511863(-) (degU) [Bacillus subtilis subsp. subtilis strain ps4100]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=575372 KMZ16_RS18195 WP_003219701.1 3511174..3511863(-) (degU) [Bacillus subtilis subsp. subtilis strain ps4100]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCAATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1